Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx2-1P50220 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx2-1P50220 Wnt10b-206ENSMUST00000228546 2709 ntBASIC12.79□□□□□ -0.36
Nkx2-1P50220 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx2-1P50220 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx2-1P50220 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx2-1P50220 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx2-1P50220 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx2-1P50220 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx2-1P50220 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC12.79□□□□□ -0.36
Nkx2-1P50220 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx2-1P50220 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx2-1P50220 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx2-1P50220 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Gm5357-201ENSMUST00000212720 1924 ntBASIC12.78□□□□□ -0.36
Nkx2-1P50220 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Ap5m1-205ENSMUST00000227431 3757 ntBASIC12.78□□□□□ -0.36
Nkx2-1P50220 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC12.78□□□□□ -0.36
Nkx2-1P50220 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Spsb2-203ENSMUST00000112473 1322 ntBASIC12.78□□□□□ -0.36
Nkx2-1P50220 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Nkx2-1P50220 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Nkx2-1P50220 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Nkx2-1P50220 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Nkx2-1P50220 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Nkx2-1P50220 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC12.77□□□□□ -0.36
Nkx2-1P50220 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Nkx2-1P50220 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC12.77□□□□□ -0.36
Nkx2-1P50220 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Nkx2-1P50220 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC12.77□□□□□ -0.36
Nkx2-1P50220 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Nkx2-1P50220 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Nkx2-1P50220 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Nkx2-1P50220 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Nkx2-1P50220 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC12.77□□□□□ -0.36
Nkx2-1P50220 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx2-1P50220 Gm6257-201ENSMUST00000163864 910 ntBASIC12.77□□□□□ -0.37
Nkx2-1P50220 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Nkx2-1P50220 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC12.77□□□□□ -0.37
Nkx2-1P50220 Gm10252-201ENSMUST00000209541 832 ntBASIC12.77□□□□□ -0.37
Nkx2-1P50220 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx2-1P50220 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx2-1P50220 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC12.77□□□□□ -0.37
Nkx2-1P50220 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Nkx2-1P50220 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx2-1P50220 Gm8784-201ENSMUST00000222096 1435 ntBASIC12.77□□□□□ -0.37
Nkx2-1P50220 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx2-1P50220 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx2-1P50220 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx2-1P50220 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx2-1P50220 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx2-1P50220 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC12.76□□□□□ -0.37
Nkx2-1P50220 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC12.76□□□□□ -0.37
Nkx2-1P50220 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx2-1P50220 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx2-1P50220 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx2-1P50220 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx2-1P50220 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Nkx2-1P50220 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx2-1P50220 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx2-1P50220 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx2-1P50220 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx2-1P50220 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx2-1P50220 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx2-1P50220 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC12.76□□□□□ -0.37
Nkx2-1P50220 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx2-1P50220 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC12.76□□□□□ -0.37
Nkx2-1P50220 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx2-1P50220 Gm29994-201ENSMUST00000195495 1193 ntBASIC12.76□□□□□ -0.37
Nkx2-1P50220 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC12.76□□□□□ -0.37
Nkx2-1P50220 Gm45058-201ENSMUST00000205810 766 ntBASIC12.76□□□□□ -0.37
Nkx2-1P50220 Gm18959-201ENSMUST00000208954 655 ntBASIC12.76□□□□□ -0.37
Nkx2-1P50220 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms