Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC18.4■□□□□ 0.54
Rfx1P48377 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Rfx1P48377 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Rfx1P48377 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Rfx1P48377 Gm43697-201ENSMUST00000199637 2581 ntBASIC18.39■□□□□ 0.54
Rfx1P48377 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Rfx1P48377 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Rfx1P48377 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Rfx1P48377 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC18.39■□□□□ 0.54
Rfx1P48377 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Rfx1P48377 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx1P48377 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx1P48377 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Rfx1P48377 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx1P48377 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx1P48377 Gm7507-201ENSMUST00000183053 1008 ntBASIC18.39■□□□□ 0.53
Rfx1P48377 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC18.39■□□□□ 0.53
Rfx1P48377 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC18.39■□□□□ 0.53
Rfx1P48377 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx1P48377 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Rfx1P48377 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx1P48377 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx1P48377 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx1P48377 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx1P48377 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx1P48377 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx1P48377 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx1P48377 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC18.39■□□□□ 0.53
Rfx1P48377 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx1P48377 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
Rfx1P48377 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx1P48377 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Rfx1P48377 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx1P48377 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx1P48377 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx1P48377 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx1P48377 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Rfx1P48377 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx1P48377 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx1P48377 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx1P48377 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC18.38■□□□□ 0.53
Rfx1P48377 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx1P48377 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx1P48377 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx1P48377 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC18.38■□□□□ 0.53
Rfx1P48377 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Rfx1P48377 Krtap5-1-202ENSMUST00000188274 742 ntBASIC18.38■□□□□ 0.53
Rfx1P48377 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC18.38■□□□□ 0.53
Rfx1P48377 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx1P48377 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Rfx1P48377 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx1P48377 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC18.38■□□□□ 0.53
Rfx1P48377 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Rfx1P48377 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx1P48377 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx1P48377 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx1P48377 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx1P48377 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
Rfx1P48377 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx1P48377 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Rfx1P48377 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx1P48377 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Rfx1P48377 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx1P48377 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx1P48377 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC18.37■□□□□ 0.53
Rfx1P48377 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx1P48377 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx1P48377 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx1P48377 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx1P48377 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC18.37■□□□□ 0.53
Rfx1P48377 AC153881.2-201ENSMUST00000214877 204 ntBASIC18.37■□□□□ 0.53
Rfx1P48377 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Rfx1P48377 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx1P48377 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx1P48377 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx1P48377 Gm11960-202ENSMUST00000181063 2858 ntBASIC18.37■□□□□ 0.53
Rfx1P48377 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
Rfx1P48377 Gm13337-201ENSMUST00000119183 1594 ntBASIC18.37■□□□□ 0.53
Rfx1P48377 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Rfx1P48377 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx1P48377 Gm5357-201ENSMUST00000212720 1924 ntBASIC18.37■□□□□ 0.53
Rfx1P48377 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx1P48377 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx1P48377 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC18.37■□□□□ 0.53
Rfx1P48377 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx1P48377 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx1P48377 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx1P48377 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Rfx1P48377 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Rfx1P48377 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Rfx1P48377 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx1P48377 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC18.36■□□□□ 0.53
Rfx1P48377 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
Rfx1P48377 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx1P48377 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx1P48377 Camk2g-217ENSMUST00000226630 1937 ntBASIC18.36■□□□□ 0.53
Rfx1P48377 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx1P48377 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx1P48377 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx1P48377 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 61.7 ms