Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC12.67□□□□□ -0.38
Sdc1P18828 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sdc1P18828 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sdc1P18828 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sdc1P18828 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sdc1P18828 Gm37691-201ENSMUST00000192147 2573 ntBASIC12.66□□□□□ -0.38
Sdc1P18828 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Sdc1P18828 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC12.66□□□□□ -0.38
Sdc1P18828 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sdc1P18828 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Sdc1P18828 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC12.66□□□□□ -0.38
Sdc1P18828 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sdc1P18828 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Sdc1P18828 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sdc1P18828 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Sdc1P18828 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC12.66□□□□□ -0.38
Sdc1P18828 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Sdc1P18828 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Sdc1P18828 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
Sdc1P18828 CT030684.3-201ENSMUST00000227308 2445 ntBASIC12.66□□□□□ -0.38
Sdc1P18828 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Sdc1P18828 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Sdc1P18828 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC12.65□□□□□ -0.38
Sdc1P18828 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Sdc1P18828 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC12.65□□□□□ -0.38
Sdc1P18828 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC12.65□□□□□ -0.38
Sdc1P18828 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Gm44450-201ENSMUST00000199528 114 ntBASIC12.65□□□□□ -0.38
Sdc1P18828 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Sdc1P18828 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC12.65□□□□□ -0.39
Sdc1P18828 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC12.65□□□□□ -0.39
Sdc1P18828 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Sdc1P18828 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
Sdc1P18828 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Gm5049-201ENSMUST00000195878 1590 ntBASIC12.64□□□□□ -0.39
Sdc1P18828 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
Sdc1P18828 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Sdc1P18828 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Sdc1P18828 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
Sdc1P18828 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Sdc1P18828 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC12.64□□□□□ -0.39
Sdc1P18828 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Sdc1P18828 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Sdc1P18828 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC12.64□□□□□ -0.39
Sdc1P18828 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC12.64□□□□□ -0.39
Sdc1P18828 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sdc1P18828 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms