Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Nup88Q8CEC0 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Nup88Q8CEC0 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC18.2■□□□□ 0.5
Nup88Q8CEC0 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Nup88Q8CEC0 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Nup88Q8CEC0 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Nup88Q8CEC0 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Nup88Q8CEC0 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
Nup88Q8CEC0 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Nup88Q8CEC0 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Nup88Q8CEC0 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC18.19■□□□□ 0.5
Nup88Q8CEC0 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Nup88Q8CEC0 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Nup88Q8CEC0 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Nup88Q8CEC0 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Nup88Q8CEC0 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Nup88Q8CEC0 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Nup88Q8CEC0 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC18.19■□□□□ 0.5
Nup88Q8CEC0 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Nup88Q8CEC0 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Nup88Q8CEC0 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Nup88Q8CEC0 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Nup88Q8CEC0 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Nup88Q8CEC0 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Gm10584-201ENSMUST00000207036 2628 ntBASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Tfap2a-203ENSMUST00000223869 2037 ntBASIC18.18■□□□□ 0.5
Nup88Q8CEC0 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Nup88Q8CEC0 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Gm29340-201ENSMUST00000188763 3854 ntBASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Gm7507-201ENSMUST00000183053 1008 ntBASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Nup88Q8CEC0 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Mir5126-201ENSMUST00000175513 77 ntBASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Nup88Q8CEC0 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 52.8 ms