Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ShhQ62226 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ShhQ62226 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ShhQ62226 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
ShhQ62226 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Gm29340-201ENSMUST00000188763 3854 ntBASIC14.37□□□□□ -0.11
ShhQ62226 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
ShhQ62226 Rbfox2-206ENSMUST00000227314 1810 ntBASIC14.37□□□□□ -0.11
ShhQ62226 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC14.37□□□□□ -0.11
ShhQ62226 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC14.37□□□□□ -0.11
ShhQ62226 Mir8117-201ENSMUST00000184773 107 ntBASIC14.37□□□□□ -0.11
ShhQ62226 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC14.37□□□□□ -0.11
ShhQ62226 Chchd1-203ENSMUST00000224633 557 ntBASIC14.37□□□□□ -0.11
ShhQ62226 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
ShhQ62226 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC14.37□□□□□ -0.11
ShhQ62226 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC14.37□□□□□ -0.11
ShhQ62226 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
ShhQ62226 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ShhQ62226 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC14.37□□□□□ -0.11
ShhQ62226 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 Gm42473-201ENSMUST00000201056 2291 ntBASIC14.36□□□□□ -0.11
ShhQ62226 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC14.36□□□□□ -0.11
ShhQ62226 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC14.36□□□□□ -0.11
ShhQ62226 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
ShhQ62226 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 Gm7507-201ENSMUST00000183053 1008 ntBASIC14.36□□□□□ -0.11
ShhQ62226 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
ShhQ62226 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC14.36□□□□□ -0.11
ShhQ62226 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
ShhQ62226 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
ShhQ62226 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
ShhQ62226 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
ShhQ62226 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
ShhQ62226 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC14.35□□□□□ -0.11
ShhQ62226 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC14.35□□□□□ -0.11
ShhQ62226 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC14.35□□□□□ -0.11
ShhQ62226 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC14.35□□□□□ -0.11
ShhQ62226 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC14.35□□□□□ -0.11
ShhQ62226 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms