Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC19■□□□□ 0.63
COL6A3P12111 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19■□□□□ 0.63
COL6A3P12111 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC19■□□□□ 0.63
COL6A3P12111 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19■□□□□ 0.63
COL6A3P12111 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19■□□□□ 0.63
COL6A3P12111 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.99■□□□□ 0.63
COL6A3P12111 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A3P12111 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A3P12111 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A3P12111 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.99■□□□□ 0.63
COL6A3P12111 SERBP1P5-201ENST00000510079 1181 ntBASIC18.99■□□□□ 0.63
COL6A3P12111 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A3P12111 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A3P12111 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A3P12111 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A3P12111 IGLL3P-201ENST00000412472 434 ntBASIC18.99■□□□□ 0.63
COL6A3P12111 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A3P12111 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.99■□□□□ 0.63
COL6A3P12111 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
COL6A3P12111 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.99■□□□□ 0.63
COL6A3P12111 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A3P12111 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
COL6A3P12111 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A3P12111 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.99■□□□□ 0.63
COL6A3P12111 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.99■□□□□ 0.63
COL6A3P12111 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A3P12111 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A3P12111 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A3P12111 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
COL6A3P12111 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A3P12111 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.98■□□□□ 0.63
COL6A3P12111 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.98■□□□□ 0.63
COL6A3P12111 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A3P12111 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A3P12111 RCC2P3-201ENST00000418112 1537 ntBASIC18.98■□□□□ 0.63
COL6A3P12111 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A3P12111 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A3P12111 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.98■□□□□ 0.63
COL6A3P12111 HLA-DPB2-205ENST00000435074 1188 ntBASIC18.98■□□□□ 0.63
COL6A3P12111 GPR53P-205ENST00000457298 1084 ntBASIC18.98■□□□□ 0.63
COL6A3P12111 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.98■□□□□ 0.63
COL6A3P12111 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A3P12111 AL589182.2-201ENST00000619332 1049 ntBASIC18.98■□□□□ 0.63
COL6A3P12111 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A3P12111 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.98■□□□□ 0.63
COL6A3P12111 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A3P12111 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.98■□□□□ 0.63
COL6A3P12111 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.98■□□□□ 0.63
COL6A3P12111 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A3P12111 MIR943-201ENST00000401286 94 ntBASIC18.98■□□□□ 0.63
COL6A3P12111 CENPM-205ENST00000404067 905 ntTSL 3 BASIC18.98■□□□□ 0.63
COL6A3P12111 BX005266.1-201ENST00000473402 457 ntBASIC18.98■□□□□ 0.63
COL6A3P12111 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A3P12111 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.98■□□□□ 0.63
COL6A3P12111 MIR6805-201ENST00000615055 62 ntBASIC18.98■□□□□ 0.63
COL6A3P12111 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
COL6A3P12111 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.98■□□□□ 0.63
COL6A3P12111 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A3P12111 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
COL6A3P12111 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
COL6A3P12111 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.98■□□□□ 0.63
COL6A3P12111 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.97■□□□□ 0.63
COL6A3P12111 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A3P12111 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
COL6A3P12111 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A3P12111 HCG4-201ENST00000418983 998 ntBASIC18.97■□□□□ 0.63
COL6A3P12111 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A3P12111 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A3P12111 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A3P12111 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A3P12111 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.97■□□□□ 0.63
COL6A3P12111 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A3P12111 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A3P12111 AC079776.2-201ENST00000641154 1609 ntBASIC18.97■□□□□ 0.63
COL6A3P12111 CU639417.3-201ENST00000624240 1404 ntBASIC18.97■□□□□ 0.63
COL6A3P12111 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.97■□□□□ 0.63
COL6A3P12111 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.97■□□□□ 0.63
COL6A3P12111 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.97■□□□□ 0.63
COL6A3P12111 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.97■□□□□ 0.63
COL6A3P12111 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.97■□□□□ 0.63
COL6A3P12111 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.97■□□□□ 0.63
COL6A3P12111 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.96■□□□□ 0.63
COL6A3P12111 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL6A3P12111 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL6A3P12111 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
COL6A3P12111 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
COL6A3P12111 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
COL6A3P12111 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL6A3P12111 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL6A3P12111 AC006557.2-201ENST00000592985 1240 ntBASIC18.96■□□□□ 0.63
COL6A3P12111 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.96■□□□□ 0.63
COL6A3P12111 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
COL6A3P12111 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL6A3P12111 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
COL6A3P12111 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL6A3P12111 PMPCAP1-201ENST00000508114 1576 ntBASIC18.96■□□□□ 0.63
COL6A3P12111 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL6A3P12111 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
COL6A3P12111 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL6A3P12111 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms