Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col1a1P11087 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Col1a1P11087 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col1a1P11087 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col1a1P11087 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col1a1P11087 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
Col1a1P11087 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC17.9■□□□□ 0.46
Col1a1P11087 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col1a1P11087 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col1a1P11087 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Col1a1P11087 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Col1a1P11087 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.46
Col1a1P11087 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Col1a1P11087 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Col1a1P11087 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col1a1P11087 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Col1a1P11087 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col1a1P11087 Gm9794-201ENSMUST00000202370 423 ntBASIC17.89■□□□□ 0.45
Col1a1P11087 AC124732.1-201ENSMUST00000221551 910 ntBASIC17.89■□□□□ 0.45
Col1a1P11087 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col1a1P11087 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Col1a1P11087 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Col1a1P11087 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col1a1P11087 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col1a1P11087 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col1a1P11087 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col1a1P11087 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col1a1P11087 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col1a1P11087 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col1a1P11087 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col1a1P11087 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC17.89■□□□□ 0.45
Col1a1P11087 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC17.89■□□□□ 0.45
Col1a1P11087 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col1a1P11087 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 Gm12490-201ENSMUST00000120255 560 ntBASIC17.88■□□□□ 0.45
Col1a1P11087 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC17.88■□□□□ 0.45
Col1a1P11087 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC17.88■□□□□ 0.45
Col1a1P11087 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 Klk2-ps-201ENSMUST00000205342 571 ntBASIC17.88■□□□□ 0.45
Col1a1P11087 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC17.88■□□□□ 0.45
Col1a1P11087 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC17.88■□□□□ 0.45
Col1a1P11087 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Col1a1P11087 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC17.88■□□□□ 0.45
Col1a1P11087 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Col1a1P11087 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC17.88■□□□□ 0.45
Col1a1P11087 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Col1a1P11087 Gm42466-201ENSMUST00000202099 1301 ntBASIC17.88■□□□□ 0.45
Col1a1P11087 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC17.87■□□□□ 0.45
Col1a1P11087 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Col1a1P11087 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC17.87■□□□□ 0.45
Col1a1P11087 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Col1a1P11087 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col1a1P11087 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col1a1P11087 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Col1a1P11087 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col1a1P11087 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Col1a1P11087 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Col1a1P11087 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col1a1P11087 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC17.87■□□□□ 0.45
Col1a1P11087 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC17.87■□□□□ 0.45
Col1a1P11087 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col1a1P11087 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Col1a1P11087 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC17.87■□□□□ 0.45
Col1a1P11087 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col1a1P11087 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col1a1P11087 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Col1a1P11087 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col1a1P11087 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC17.87■□□□□ 0.45
Col1a1P11087 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col1a1P11087 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
Col1a1P11087 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col1a1P11087 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Col1a1P11087 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Col1a1P11087 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col1a1P11087 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col1a1P11087 Gm15321-201ENSMUST00000121290 288 ntBASIC17.86■□□□□ 0.45
Col1a1P11087 Ighv8-7-201ENSMUST00000194349 297 ntBASIC17.86■□□□□ 0.45
Col1a1P11087 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Col1a1P11087 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC17.86■□□□□ 0.45
Col1a1P11087 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Col1a1P11087 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC17.86■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 45.8 ms