Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smarce1O54941 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smarce1O54941 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smarce1O54941 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Smarce1O54941 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smarce1O54941 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smarce1O54941 Gm5049-201ENSMUST00000195878 1590 ntBASIC18.35■□□□□ 0.53
Smarce1O54941 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smarce1O54941 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Smarce1O54941 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC18.35■□□□□ 0.53
Smarce1O54941 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC18.35■□□□□ 0.53
Smarce1O54941 Gm19164-201ENSMUST00000210667 640 ntBASIC18.35■□□□□ 0.53
Smarce1O54941 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Smarce1O54941 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC18.35■□□□□ 0.53
Smarce1O54941 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smarce1O54941 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Smarce1O54941 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Smarce1O54941 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smarce1O54941 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smarce1O54941 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smarce1O54941 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Smarce1O54941 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Smarce1O54941 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 AA414768-201ENSMUST00000121924 1257 ntBASIC18.34■□□□□ 0.53
Smarce1O54941 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC18.34■□□□□ 0.53
Smarce1O54941 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Smarce1O54941 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC18.34■□□□□ 0.53
Smarce1O54941 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Smarce1O54941 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
Smarce1O54941 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC18.34■□□□□ 0.53
Smarce1O54941 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smarce1O54941 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Smarce1O54941 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Smarce1O54941 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Smarce1O54941 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Smarce1O54941 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Smarce1O54941 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Smarce1O54941 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
Smarce1O54941 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Smarce1O54941 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smarce1O54941 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smarce1O54941 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC18.33■□□□□ 0.52
Smarce1O54941 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC18.33■□□□□ 0.52
Smarce1O54941 Gm6728-201ENSMUST00000178117 1065 ntBASIC18.33■□□□□ 0.52
Smarce1O54941 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Smarce1O54941 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Smarce1O54941 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smarce1O54941 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smarce1O54941 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC18.33■□□□□ 0.52
Smarce1O54941 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smarce1O54941 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smarce1O54941 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smarce1O54941 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smarce1O54941 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smarce1O54941 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smarce1O54941 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smarce1O54941 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smarce1O54941 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
Smarce1O54941 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC18.32■□□□□ 0.52
Smarce1O54941 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC18.32■□□□□ 0.52
Smarce1O54941 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 Vti1a-206ENSMUST00000225529 1244 ntBASIC18.32■□□□□ 0.52
Smarce1O54941 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Smarce1O54941 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smarce1O54941 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC18.32■□□□□ 0.52
Smarce1O54941 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms