Protein–RNA interactions for Protein: Q8C006

Trim35, Tripartite motif-containing protein 35, mousemouse

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim35Q8C006 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim35Q8C006 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim35Q8C006 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Trim35Q8C006 C130083A15Rik-201ENSMUST00000205707 1460 ntBASIC16.3■□□□□ 0.2
Trim35Q8C006 Asb11-202ENSMUST00000036858 1445 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim35Q8C006 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim35Q8C006 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
Trim35Q8C006 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim35Q8C006 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim35Q8C006 Gin1-202ENSMUST00000112842 1037 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim35Q8C006 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim35Q8C006 Gm8641-201ENSMUST00000186995 826 ntBASIC16.3■□□□□ 0.2
Trim35Q8C006 Rd3l-204ENSMUST00000190536 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim35Q8C006 Gm43124-201ENSMUST00000201878 278 ntBASIC16.3■□□□□ 0.2
Trim35Q8C006 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Trim35Q8C006 AC122305.3-201ENSMUST00000214762 361 ntTSL 3 BASIC16.3■□□□□ 0.2
Trim35Q8C006 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim35Q8C006 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim35Q8C006 Olfr488-201ENSMUST00000072968 945 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Trim35Q8C006 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim35Q8C006 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim35Q8C006 Gm44443-201ENSMUST00000204396 5633 ntBASIC16.3■□□□□ 0.2
Trim35Q8C006 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC16.3■□□□□ 0.2
Trim35Q8C006 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim35Q8C006 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim35Q8C006 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim35Q8C006 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trim35Q8C006 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
Trim35Q8C006 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim35Q8C006 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim35Q8C006 Araf-202ENSMUST00000120356 1520 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Gm45212-201ENSMUST00000205831 3403 ntBASIC16.29■□□□□ 0.2
Trim35Q8C006 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Gm43149-201ENSMUST00000198162 1422 ntBASIC16.29■□□□□ 0.2
Trim35Q8C006 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC16.29■□□□□ 0.2
Trim35Q8C006 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC16.29■□□□□ 0.2
Trim35Q8C006 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC16.29■□□□□ 0.2
Trim35Q8C006 Gm44809-201ENSMUST00000208305 993 ntBASIC16.29■□□□□ 0.2
Trim35Q8C006 Vmn1r39-202ENSMUST00000226783 918 ntAPPRIS P2 BASIC16.29■□□□□ 0.2
Trim35Q8C006 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Trim35Q8C006 Olfr816-201ENSMUST00000071605 939 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Trim35Q8C006 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC16.29■□□□□ 0.2
Trim35Q8C006 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim35Q8C006 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
Trim35Q8C006 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Trim35Q8C006 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim35Q8C006 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Trim35Q8C006 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim35Q8C006 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim35Q8C006 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim35Q8C006 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim35Q8C006 Gm9575-201ENSMUST00000122140 1339 ntBASIC16.28■□□□□ 0.2
Trim35Q8C006 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC16.28■□□□□ 0.2
Trim35Q8C006 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim35Q8C006 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim35Q8C006 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Trim35Q8C006 Csn3-202ENSMUST00000113267 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim35Q8C006 Gm15515-201ENSMUST00000117827 822 ntBASIC16.28■□□□□ 0.2
Trim35Q8C006 Mup-ps10-201ENSMUST00000119626 556 ntBASIC16.28■□□□□ 0.2
Trim35Q8C006 Gm15122-201ENSMUST00000135434 462 ntTSL 2 BASIC16.28■□□□□ 0.2
Trim35Q8C006 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC16.28■□□□□ 0.2
Trim35Q8C006 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC16.28■□□□□ 0.2
Trim35Q8C006 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC16.28■□□□□ 0.2
Trim35Q8C006 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC16.28■□□□□ 0.2
Trim35Q8C006 Gm17611-202ENSMUST00000220613 814 ntBASIC16.28■□□□□ 0.2
Trim35Q8C006 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim35Q8C006 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim35Q8C006 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim35Q8C006 Olfr190-201ENSMUST00000071243 924 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Trim35Q8C006 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim35Q8C006 Vmn1r85-201ENSMUST00000094829 927 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Trim35Q8C006 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim35Q8C006 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim35Q8C006 Gm42822-201ENSMUST00000200507 1529 ntBASIC16.28■□□□□ 0.2
Trim35Q8C006 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim35Q8C006 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim35Q8C006 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms