Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Gm5364-201ENSMUST00000216789 889 ntBASIC18.18■□□□□ 0.5
Limch1Q3UH68 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Limch1Q3UH68 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Limch1Q3UH68 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC18.17■□□□□ 0.5
Limch1Q3UH68 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Limch1Q3UH68 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Limch1Q3UH68 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Limch1Q3UH68 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Limch1Q3UH68 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Limch1Q3UH68 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Limch1Q3UH68 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC18.17■□□□□ 0.5
Limch1Q3UH68 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Limch1Q3UH68 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Limch1Q3UH68 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Limch1Q3UH68 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC18.17■□□□□ 0.5
Limch1Q3UH68 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Limch1Q3UH68 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Limch1Q3UH68 Prkcz2-201ENSMUST00000206136 1756 ntBASIC18.17■□□□□ 0.5
Limch1Q3UH68 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC18.16■□□□□ 0.5
Limch1Q3UH68 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC18.16■□□□□ 0.5
Limch1Q3UH68 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC18.16■□□□□ 0.5
Limch1Q3UH68 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Limch1Q3UH68 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Limch1Q3UH68 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Limch1Q3UH68 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Limch1Q3UH68 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
Limch1Q3UH68 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Limch1Q3UH68 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Limch1Q3UH68 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Limch1Q3UH68 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Limch1Q3UH68 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Limch1Q3UH68 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC18.15■□□□□ 0.5
Limch1Q3UH68 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Limch1Q3UH68 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Limch1Q3UH68 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Limch1Q3UH68 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Limch1Q3UH68 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Limch1Q3UH68 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Limch1Q3UH68 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Limch1Q3UH68 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Limch1Q3UH68 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Limch1Q3UH68 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Limch1Q3UH68 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Limch1Q3UH68 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Limch1Q3UH68 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC18.14■□□□□ 0.5
Limch1Q3UH68 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Limch1Q3UH68 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Limch1Q3UH68 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Limch1Q3UH68 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Limch1Q3UH68 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Limch1Q3UH68 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC18.14■□□□□ 0.5
Limch1Q3UH68 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Limch1Q3UH68 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC18.14■□□□□ 0.49
Limch1Q3UH68 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Limch1Q3UH68 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Limch1Q3UH68 Gm25990-201ENSMUST00000102440 86 ntBASIC18.14■□□□□ 0.49
Limch1Q3UH68 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC18.14■□□□□ 0.49
Limch1Q3UH68 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Limch1Q3UH68 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Limch1Q3UH68 Gm4535-201ENSMUST00000182274 558 ntBASIC18.14■□□□□ 0.49
Limch1Q3UH68 Gm43332-201ENSMUST00000202511 1044 ntBASIC18.14■□□□□ 0.49
Limch1Q3UH68 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC18.14■□□□□ 0.49
Limch1Q3UH68 Gm7506-201ENSMUST00000207758 815 ntBASIC18.14■□□□□ 0.49
Limch1Q3UH68 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC18.14■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms