Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Mir5130-201ENSMUST00000175160 84 ntBASIC17.28■□□□□ 0.36
Tpm1P58771 Gm22240-201ENSMUST00000175225 82 ntBASIC17.28■□□□□ 0.36
Tpm1P58771 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Tpm1P58771 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Tpm1P58771 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Tpm1P58771 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Tpm1P58771 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
Tpm1P58771 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Tpm1P58771 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Tpm1P58771 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Tpm1P58771 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Tpm1P58771 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Tpm1P58771 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Tpm1P58771 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Tpm1P58771 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Tpm1P58771 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Tpm1P58771 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Tpm1P58771 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Tpm1P58771 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Tpm1P58771 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Tpm1P58771 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Tpm1P58771 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Tpm1P58771 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Tpm1P58771 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC17.27■□□□□ 0.36
Tpm1P58771 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC17.27■□□□□ 0.36
Tpm1P58771 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC17.27■□□□□ 0.36
Tpm1P58771 Gm44430-201ENSMUST00000203376 995 ntBASIC17.27■□□□□ 0.36
Tpm1P58771 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC17.27■□□□□ 0.36
Tpm1P58771 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Tpm1P58771 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Tpm1P58771 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Tpm1P58771 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC17.27■□□□□ 0.35
Tpm1P58771 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Tpm1P58771 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Tpm1P58771 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC17.27■□□□□ 0.35
Tpm1P58771 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC17.27■□□□□ 0.35
Tpm1P58771 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
Tpm1P58771 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Tpm1P58771 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
Tpm1P58771 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Tpm1P58771 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC17.26■□□□□ 0.35
Tpm1P58771 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC17.26■□□□□ 0.35
Tpm1P58771 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Gm9889-202ENSMUST00000206983 1577 ntBASIC17.26■□□□□ 0.35
Tpm1P58771 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Tpm1P58771 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Tpm1P58771 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Tpm1P58771 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Tpm1P58771 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Tpm1P58771 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Tpm1P58771 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Tpm1P58771 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Tpm1P58771 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC17.25■□□□□ 0.35
Tpm1P58771 Gm13436-201ENSMUST00000120418 567 ntBASIC17.25■□□□□ 0.35
Tpm1P58771 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Tpm1P58771 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC17.25■□□□□ 0.35
Tpm1P58771 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC17.25■□□□□ 0.35
Tpm1P58771 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC17.25■□□□□ 0.35
Tpm1P58771 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Tpm1P58771 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Tpm1P58771 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
Tpm1P58771 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC17.25■□□□□ 0.35
Tpm1P58771 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
Tpm1P58771 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Tpm1P58771 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
Tpm1P58771 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Tpm1P58771 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Tpm1P58771 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC17.24■□□□□ 0.35
Tpm1P58771 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Tpm1P58771 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Tpm1P58771 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Tpm1P58771 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Tpm1P58771 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Tpm1P58771 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC17.24■□□□□ 0.35
Tpm1P58771 Gm27389-201ENSMUST00000183622 195 ntBASIC17.24■□□□□ 0.35
Tpm1P58771 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC17.24■□□□□ 0.35
Tpm1P58771 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC17.24■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms