Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sdc1P18828 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Sdc1P18828 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sdc1P18828 Gm8784-201ENSMUST00000222096 1435 ntBASIC12.72□□□□□ -0.37
Sdc1P18828 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
Sdc1P18828 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sdc1P18828 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sdc1P18828 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sdc1P18828 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sdc1P18828 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sdc1P18828 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sdc1P18828 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sdc1P18828 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Sdc1P18828 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sdc1P18828 Gm11249-201ENSMUST00000117071 859 ntBASIC12.72□□□□□ -0.37
Sdc1P18828 Gm13148-201ENSMUST00000118892 745 ntBASIC12.72□□□□□ -0.37
Sdc1P18828 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC12.72□□□□□ -0.37
Sdc1P18828 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Sdc1P18828 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sdc1P18828 Gm44672-201ENSMUST00000206944 1098 ntBASIC12.72□□□□□ -0.37
Sdc1P18828 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Sdc1P18828 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
Sdc1P18828 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
Sdc1P18828 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sdc1P18828 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sdc1P18828 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Sdc1P18828 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC12.72□□□□□ -0.37
Sdc1P18828 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sdc1P18828 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sdc1P18828 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sdc1P18828 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sdc1P18828 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sdc1P18828 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
Sdc1P18828 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Sdc1P18828 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sdc1P18828 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sdc1P18828 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC12.71□□□□□ -0.37
Sdc1P18828 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sdc1P18828 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
Sdc1P18828 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sdc1P18828 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Sdc1P18828 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sdc1P18828 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC12.71□□□□□ -0.37
Sdc1P18828 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Sdc1P18828 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sdc1P18828 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC12.71□□□□□ -0.37
Sdc1P18828 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Sdc1P18828 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Sdc1P18828 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC12.71□□□□□ -0.37
Sdc1P18828 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC12.71□□□□□ -0.37
Sdc1P18828 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sdc1P18828 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sdc1P18828 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sdc1P18828 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sdc1P18828 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sdc1P18828 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC12.71□□□□□ -0.38
Sdc1P18828 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Sdc1P18828 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sdc1P18828 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sdc1P18828 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sdc1P18828 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sdc1P18828 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sdc1P18828 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC12.71□□□□□ -0.38
Sdc1P18828 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC12.71□□□□□ -0.38
Sdc1P18828 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Sdc1P18828 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC12.7□□□□□ -0.38
Sdc1P18828 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC12.7□□□□□ -0.38
Sdc1P18828 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
Sdc1P18828 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Sdc1P18828 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Sdc1P18828 Gm18115-201ENSMUST00000221209 621 ntBASIC12.7□□□□□ -0.38
Sdc1P18828 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC12.7□□□□□ -0.38
Sdc1P18828 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sdc1P18828 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sdc1P18828 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms