Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
Col3a1P08121 Gm6018-201ENSMUST00000216090 1306 ntBASIC18.31■□□□□ 0.52
Col3a1P08121 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col3a1P08121 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col3a1P08121 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col3a1P08121 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col3a1P08121 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.31■□□□□ 0.52
Col3a1P08121 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col3a1P08121 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC18.3■□□□□ 0.52
Col3a1P08121 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col3a1P08121 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col3a1P08121 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col3a1P08121 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col3a1P08121 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Col3a1P08121 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col3a1P08121 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col3a1P08121 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC18.3■□□□□ 0.52
Col3a1P08121 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Col3a1P08121 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col3a1P08121 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col3a1P08121 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col3a1P08121 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col3a1P08121 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col3a1P08121 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC18.3■□□□□ 0.52
Col3a1P08121 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col3a1P08121 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col3a1P08121 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Col3a1P08121 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col3a1P08121 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col3a1P08121 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col3a1P08121 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Col3a1P08121 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col3a1P08121 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col3a1P08121 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col3a1P08121 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
Col3a1P08121 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Col3a1P08121 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col3a1P08121 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC18.29■□□□□ 0.52
Col3a1P08121 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col3a1P08121 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col3a1P08121 Gm7336-201ENSMUST00000107041 1232 ntBASIC18.29■□□□□ 0.52
Col3a1P08121 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col3a1P08121 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC18.29■□□□□ 0.52
Col3a1P08121 Gm43767-201ENSMUST00000198933 381 ntBASIC18.29■□□□□ 0.52
Col3a1P08121 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC18.29■□□□□ 0.52
Col3a1P08121 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Col3a1P08121 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col3a1P08121 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col3a1P08121 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col3a1P08121 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC18.28■□□□□ 0.52
Col3a1P08121 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col3a1P08121 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col3a1P08121 Gm15693-201ENSMUST00000120470 637 ntBASIC18.28■□□□□ 0.52
Col3a1P08121 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col3a1P08121 AA543401-201ENSMUST00000164248 1269 ntBASIC18.28■□□□□ 0.52
Col3a1P08121 Gm18737-201ENSMUST00000173594 937 ntBASIC18.28■□□□□ 0.52
Col3a1P08121 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC18.28■□□□□ 0.52
Col3a1P08121 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC18.28■□□□□ 0.52
Col3a1P08121 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col3a1P08121 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col3a1P08121 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col3a1P08121 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col3a1P08121 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col3a1P08121 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC18.28■□□□□ 0.52
Col3a1P08121 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col3a1P08121 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col3a1P08121 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col3a1P08121 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col3a1P08121 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col3a1P08121 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col3a1P08121 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC18.27■□□□□ 0.52
Col3a1P08121 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col3a1P08121 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col3a1P08121 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col3a1P08121 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col3a1P08121 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col3a1P08121 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Col3a1P08121 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Col3a1P08121 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Col3a1P08121 AC154767.3-201ENSMUST00000225150 1342 ntBASIC18.27■□□□□ 0.51
Col3a1P08121 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col3a1P08121 Gm8597-201ENSMUST00000191525 1109 ntBASIC18.26■□□□□ 0.51
Col3a1P08121 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col3a1P08121 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col3a1P08121 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Col3a1P08121 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col3a1P08121 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC18.26■□□□□ 0.51
Col3a1P08121 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
Col3a1P08121 Gm13127-201ENSMUST00000118978 1389 ntBASIC18.26■□□□□ 0.51
Col3a1P08121 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col3a1P08121 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col3a1P08121 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col3a1P08121 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col3a1P08121 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col3a1P08121 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col3a1P08121 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col3a1P08121 Wdyhv1-206ENSMUST00000227142 786 ntBASIC18.26■□□□□ 0.51
Col3a1P08121 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col3a1P08121 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col3a1P08121 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms