Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Gm37584-201ENSMUST00000193595 1290 ntBASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Gm43347-201ENSMUST00000200226 580 ntBASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 AC093926.2-201ENSMUST00000214468 1228 ntBASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Gm10819-201ENSMUST00000099988 561 ntBASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Ddx56Q9D0R4 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ddx56Q9D0R4 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ddx56Q9D0R4 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ddx56Q9D0R4 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ddx56Q9D0R4 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ddx56Q9D0R4 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ddx56Q9D0R4 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC16.27■□□□□ 0.2
Ddx56Q9D0R4 Gm27459-201ENSMUST00000184860 107 ntBASIC16.27■□□□□ 0.2
Ddx56Q9D0R4 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
Ddx56Q9D0R4 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Ddx56Q9D0R4 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC16.27■□□□□ 0.2
Ddx56Q9D0R4 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Ddx56Q9D0R4 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ddx56Q9D0R4 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ddx56Q9D0R4 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Ddx56Q9D0R4 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Ddx56Q9D0R4 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC16.27■□□□□ 0.19
Ddx56Q9D0R4 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ddx56Q9D0R4 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ddx56Q9D0R4 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Gm4535-201ENSMUST00000182274 558 ntBASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 AC159301.1-201ENSMUST00000225130 1182 ntBASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Gm10355-201ENSMUST00000097146 517 ntBASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Grk6-207ENSMUST00000225925 2769 ntBASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Ddx56Q9D0R4 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Gm11780-201ENSMUST00000136880 516 ntBASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms