Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp40Q8BWR4 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp40Q8BWR4 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
Usp40Q8BWR4 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp40Q8BWR4 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp40Q8BWR4 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp40Q8BWR4 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Usp40Q8BWR4 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC21.16■□□□□ 0.98
Usp40Q8BWR4 Rprl2-201ENSMUST00000157150 290 ntBASIC21.16■□□□□ 0.98
Usp40Q8BWR4 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Usp40Q8BWR4 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp40Q8BWR4 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC21.16■□□□□ 0.98
Usp40Q8BWR4 Gm10154-201ENSMUST00000084445 354 ntBASIC21.16■□□□□ 0.98
Usp40Q8BWR4 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp40Q8BWR4 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp40Q8BWR4 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp40Q8BWR4 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Usp40Q8BWR4 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 Gm13616-201ENSMUST00000120600 222 ntBASIC21.15■□□□□ 0.98
Usp40Q8BWR4 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC21.15■□□□□ 0.98
Usp40Q8BWR4 Gm43474-201ENSMUST00000196415 774 ntBASIC21.15■□□□□ 0.98
Usp40Q8BWR4 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
Usp40Q8BWR4 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Usp40Q8BWR4 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Usp40Q8BWR4 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Usp40Q8BWR4 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Usp40Q8BWR4 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Usp40Q8BWR4 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
Usp40Q8BWR4 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Usp40Q8BWR4 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Usp40Q8BWR4 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Usp40Q8BWR4 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Usp40Q8BWR4 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp40Q8BWR4 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Usp40Q8BWR4 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
Usp40Q8BWR4 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp40Q8BWR4 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Usp40Q8BWR4 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Usp40Q8BWR4 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 AC126250.1-201ENSMUST00000228343 1768 ntBASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Mir6956-201ENSMUST00000183598 62 ntBASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Usp40Q8BWR4 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Usp40Q8BWR4 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Usp40Q8BWR4 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp40Q8BWR4 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC21.12■□□□□ 0.97
Usp40Q8BWR4 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp40Q8BWR4 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Usp40Q8BWR4 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp40Q8BWR4 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Usp40Q8BWR4 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp40Q8BWR4 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC21.12■□□□□ 0.97
Usp40Q8BWR4 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC21.12■□□□□ 0.97
Usp40Q8BWR4 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp40Q8BWR4 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp40Q8BWR4 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Usp40Q8BWR4 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms