Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC10.49□□□□□ -0.73
Trav3-1Q5R1I8 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC10.49□□□□□ -0.73
Trav3-1Q5R1I8 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Trav3-1Q5R1I8 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Trav3-1Q5R1I8 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC10.49□□□□□ -0.73
Trav3-1Q5R1I8 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Trav3-1Q5R1I8 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Trav3-1Q5R1I8 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
Trav3-1Q5R1I8 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Trav3-1Q5R1I8 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
Trav3-1Q5R1I8 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Trav3-1Q5R1I8 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Trav3-1Q5R1I8 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Trav3-1Q5R1I8 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Trav3-1Q5R1I8 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
Trav3-1Q5R1I8 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC10.49□□□□□ -0.73
Trav3-1Q5R1I8 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Trav3-1Q5R1I8 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Mmp14-206ENSMUST00000225641 3238 ntBASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Gm7860-201ENSMUST00000121190 879 ntBASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Gm10420-201ENSMUST00000121713 882 ntBASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Camk2g-217ENSMUST00000226630 1937 ntBASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-1Q5R1I8 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Gm42471-201ENSMUST00000201457 1865 ntBASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-1Q5R1I8 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.73
Trav3-1Q5R1I8 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Trav3-1Q5R1I8 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC10.46□□□□□ -0.73
Trav3-1Q5R1I8 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC10.46□□□□□ -0.73
Trav3-1Q5R1I8 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms