Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Tnfsf4P43488 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC14.97□□□□□ -0.01
Tnfsf4P43488 Gm25016-201ENSMUST00000158399 131 ntBASIC14.97□□□□□ -0.01
Tnfsf4P43488 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Gm29518-201ENSMUST00000190858 372 ntBASIC14.97□□□□□ -0.01
Tnfsf4P43488 Ighv6-1-201ENSMUST00000193612 343 ntBASIC14.97□□□□□ -0.01
Tnfsf4P43488 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Tnfsf4P43488 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Tnfsf4P43488 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Tnfsf4P43488 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Tnfsf4P43488 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Tnfsf4P43488 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Tnfsf4P43488 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Tnfsf4P43488 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Tnfsf4P43488 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Tnfsf4P43488 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
Tnfsf4P43488 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Tnfsf4P43488 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC14.96□□□□□ -0.01
Tnfsf4P43488 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Tnfsf4P43488 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Tnfsf4P43488 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Tnfsf4P43488 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Tnfsf4P43488 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Tnfsf4P43488 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Tnfsf4P43488 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Tnfsf4P43488 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Tnfsf4P43488 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Gm13337-201ENSMUST00000119183 1594 ntBASIC14.95□□□□□ -0.02
Tnfsf4P43488 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Tnfsf4P43488 AC153794.1-201ENSMUST00000169148 126 ntBASIC14.95□□□□□ -0.02
Tnfsf4P43488 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC14.95□□□□□ -0.02
Tnfsf4P43488 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC14.95□□□□□ -0.02
Tnfsf4P43488 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Tnfsf4P43488 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC14.94□□□□□ -0.02
Tnfsf4P43488 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC14.94□□□□□ -0.02
Tnfsf4P43488 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms