Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC12.75□□□□□ -0.37
Sdc1P18828 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
Sdc1P18828 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC12.75□□□□□ -0.37
Sdc1P18828 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Sdc1P18828 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC12.75□□□□□ -0.37
Sdc1P18828 Nupl1-207ENSMUST00000225311 2475 ntBASIC12.75□□□□□ -0.37
Sdc1P18828 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Dio3-201ENSMUST00000097228 1449 ntBASIC12.75□□□□□ -0.37
Sdc1P18828 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Sdc1P18828 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Sdc1P18828 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Sdc1P18828 Gm43509-201ENSMUST00000196551 2594 ntBASIC12.75□□□□□ -0.37
Sdc1P18828 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.37
Sdc1P18828 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Sdc1P18828 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 AC154855.1-201ENSMUST00000227353 1458 ntBASIC12.74□□□□□ -0.37
Sdc1P18828 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC12.74□□□□□ -0.37
Sdc1P18828 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Gm13186-201ENSMUST00000118031 316 ntBASIC12.74□□□□□ -0.37
Sdc1P18828 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC12.74□□□□□ -0.37
Sdc1P18828 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Sdc1P18828 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC12.74□□□□□ -0.37
Sdc1P18828 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sdc1P18828 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Sdc1P18828 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC12.74□□□□□ -0.37
Sdc1P18828 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Sdc1P18828 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Sdc1P18828 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Gm38391-201ENSMUST00000191720 4069 ntBASIC12.73□□□□□ -0.37
Sdc1P18828 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Sdc1P18828 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Sdc1P18828 Gm43205-201ENSMUST00000198622 1968 ntBASIC12.73□□□□□ -0.37
Sdc1P18828 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC12.73□□□□□ -0.37
Sdc1P18828 Gm7638-201ENSMUST00000121348 967 ntBASIC12.73□□□□□ -0.37
Sdc1P18828 Gm13158-201ENSMUST00000122007 736 ntBASIC12.73□□□□□ -0.37
Sdc1P18828 AV356131-201ENSMUST00000206201 750 ntBASIC12.73□□□□□ -0.37
Sdc1P18828 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC12.73□□□□□ -0.37
Sdc1P18828 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC12.73□□□□□ -0.37
Sdc1P18828 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sdc1P18828 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms