Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msh4Q99MT2 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC15.13■□□□□ 0.01
Msh4Q99MT2 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Gm25745-201ENSMUST00000174945 133 ntBASIC15.13■□□□□ 0.01
Msh4Q99MT2 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Gm5864-201ENSMUST00000202263 970 ntBASIC15.13■□□□□ 0.01
Msh4Q99MT2 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC15.13■□□□□ 0.01
Msh4Q99MT2 AC160338.1-201ENSMUST00000214232 705 ntBASIC15.13■□□□□ 0.01
Msh4Q99MT2 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Msh4Q99MT2 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Msh4Q99MT2 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Gm13884-201ENSMUST00000118103 829 ntBASIC15.12■□□□□ 0.01
Msh4Q99MT2 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Msh4Q99MT2 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Msh4Q99MT2 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Msh4Q99MT2 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Msh4Q99MT2 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Msh4Q99MT2 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msh4Q99MT2 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Msh4Q99MT2 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC15.11■□□□□ 0.01
Msh4Q99MT2 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Msh4Q99MT2 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msh4Q99MT2 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
Msh4Q99MT2 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msh4Q99MT2 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msh4Q99MT2 Sybu-209ENSMUST00000228639 4113 ntBASIC15.11■□□□□ 0.01
Msh4Q99MT2 Asic1-205ENSMUST00000228185 1818 ntBASIC15.11■□□□□ 0.01
Msh4Q99MT2 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Msh4Q99MT2 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC15.11■□□□□ 0.01
Msh4Q99MT2 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msh4Q99MT2 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC15.11■□□□□ 0.01
Msh4Q99MT2 AC164629.2-201ENSMUST00000217916 270 ntBASIC15.11■□□□□ 0.01
Msh4Q99MT2 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msh4Q99MT2 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msh4Q99MT2 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Msh4Q99MT2 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Msh4Q99MT2 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 59.2 ms