Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC20.05■□□□□ 0.8
Trim28Q62318 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Trim28Q62318 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC20.05■□□□□ 0.8
Trim28Q62318 AC164567.1-201ENSMUST00000219185 960 ntBASIC20.05■□□□□ 0.8
Trim28Q62318 CT030684.1-201ENSMUST00000227292 914 ntBASIC20.05■□□□□ 0.8
Trim28Q62318 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
Trim28Q62318 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Trim28Q62318 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC20.05■□□□□ 0.8
Trim28Q62318 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Trim28Q62318 AC093043.3-201ENSMUST00000226531 2273 ntBASIC20.05■□□□□ 0.8
Trim28Q62318 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim28Q62318 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim28Q62318 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC20.04■□□□□ 0.8
Trim28Q62318 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim28Q62318 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Trim28Q62318 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim28Q62318 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Trim28Q62318 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC20.04■□□□□ 0.8
Trim28Q62318 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Trim28Q62318 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Trim28Q62318 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Trim28Q62318 Gm44335-201ENSMUST00000196879 141 ntBASIC20.04■□□□□ 0.8
Trim28Q62318 Gm44297-201ENSMUST00000198304 141 ntBASIC20.04■□□□□ 0.8
Trim28Q62318 Gm44346-201ENSMUST00000198851 141 ntBASIC20.04■□□□□ 0.8
Trim28Q62318 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Trim28Q62318 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim28Q62318 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim28Q62318 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim28Q62318 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim28Q62318 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim28Q62318 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim28Q62318 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim28Q62318 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim28Q62318 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim28Q62318 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Trim28Q62318 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim28Q62318 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Trim28Q62318 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim28Q62318 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Trim28Q62318 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Trim28Q62318 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Trim28Q62318 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
Trim28Q62318 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim28Q62318 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Trim28Q62318 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Trim28Q62318 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC20.03■□□□□ 0.8
Trim28Q62318 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
Trim28Q62318 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Trim28Q62318 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim28Q62318 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim28Q62318 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim28Q62318 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim28Q62318 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC20.02■□□□□ 0.8
Trim28Q62318 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim28Q62318 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim28Q62318 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim28Q62318 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim28Q62318 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Trim28Q62318 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Trim28Q62318 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Trim28Q62318 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Trim28Q62318 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim28Q62318 Gm16026-204ENSMUST00000162652 683 ntBASIC20.02■□□□□ 0.8
Trim28Q62318 Gm18889-201ENSMUST00000174284 929 ntBASIC20.02■□□□□ 0.8
Trim28Q62318 Mir6990-201ENSMUST00000183724 91 ntBASIC20.02■□□□□ 0.8
Trim28Q62318 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim28Q62318 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim28Q62318 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC20.02■□□□□ 0.8
Trim28Q62318 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC20.02■□□□□ 0.8
Trim28Q62318 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Trim28Q62318 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim28Q62318 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Trim28Q62318 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim28Q62318 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Trim28Q62318 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim28Q62318 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC20.02■□□□□ 0.79
Trim28Q62318 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim28Q62318 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
Trim28Q62318 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim28Q62318 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
Trim28Q62318 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim28Q62318 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim28Q62318 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim28Q62318 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim28Q62318 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Trim28Q62318 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim28Q62318 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim28Q62318 Nudt18-203ENSMUST00000228768 1578 ntBASIC20.01■□□□□ 0.79
Trim28Q62318 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim28Q62318 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim28Q62318 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Trim28Q62318 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC20.01■□□□□ 0.79
Trim28Q62318 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC20.01■□□□□ 0.79
Trim28Q62318 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Trim28Q62318 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim28Q62318 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim28Q62318 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim28Q62318 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim28Q62318 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim28Q62318 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC20.01■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms