Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav6-3Q5R1E6 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trav6-3Q5R1E6 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trav6-3Q5R1E6 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav6-3Q5R1E6 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav6-3Q5R1E6 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav6-3Q5R1E6 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Trav6-3Q5R1E6 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC12.48□□□□□ -0.41
Trav6-3Q5R1E6 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trav6-3Q5R1E6 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trav6-3Q5R1E6 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
Trav6-3Q5R1E6 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC12.48□□□□□ -0.41
Trav6-3Q5R1E6 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav6-3Q5R1E6 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trav6-3Q5R1E6 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trav6-3Q5R1E6 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Gm5421-201ENSMUST00000181698 2354 ntBASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Mir3081-201ENSMUST00000175305 84 ntBASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Gm44454-201ENSMUST00000198541 138 ntBASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 AC121577.1-201ENSMUST00000227302 707 ntBASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trav6-3Q5R1E6 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trav6-3Q5R1E6 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trav6-3Q5R1E6 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trav6-3Q5R1E6 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
Trav6-3Q5R1E6 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trav6-3Q5R1E6 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC12.46□□□□□ -0.42
Trav6-3Q5R1E6 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trav6-3Q5R1E6 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Trav6-3Q5R1E6 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trav6-3Q5R1E6 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Trav6-3Q5R1E6 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Trav6-3Q5R1E6 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Trav6-3Q5R1E6 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Trav6-3Q5R1E6 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Trav6-3Q5R1E6 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Trav6-3Q5R1E6 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Trav6-3Q5R1E6 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Trav6-3Q5R1E6 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Trav6-3Q5R1E6 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Trav6-3Q5R1E6 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Trav6-3Q5R1E6 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Trav6-3Q5R1E6 AC174678.1-201ENSMUST00000228007 2749 ntBASIC12.45□□□□□ -0.42
Trav6-3Q5R1E6 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Trav6-3Q5R1E6 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms