Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim3Q9R1R2 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
Trim3Q9R1R2 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC21.16■□□□□ 0.98
Trim3Q9R1R2 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim3Q9R1R2 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
Trim3Q9R1R2 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim3Q9R1R2 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim3Q9R1R2 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Trim3Q9R1R2 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Trim3Q9R1R2 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC21.15■□□□□ 0.98
Trim3Q9R1R2 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim3Q9R1R2 Gm14121-201ENSMUST00000121441 1380 ntBASIC21.14■□□□□ 0.98
Trim3Q9R1R2 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Trim3Q9R1R2 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim3Q9R1R2 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim3Q9R1R2 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim3Q9R1R2 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim3Q9R1R2 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC21.13■□□□□ 0.97
Trim3Q9R1R2 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim3Q9R1R2 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim3Q9R1R2 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Trim3Q9R1R2 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim3Q9R1R2 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim3Q9R1R2 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim3Q9R1R2 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim3Q9R1R2 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim3Q9R1R2 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim3Q9R1R2 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim3Q9R1R2 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Trim3Q9R1R2 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim3Q9R1R2 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Trim3Q9R1R2 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim3Q9R1R2 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim3Q9R1R2 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC21.09■□□□□ 0.97
Trim3Q9R1R2 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
Trim3Q9R1R2 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Trim3Q9R1R2 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim3Q9R1R2 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim3Q9R1R2 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC21.08■□□□□ 0.96
Trim3Q9R1R2 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
Trim3Q9R1R2 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim3Q9R1R2 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim3Q9R1R2 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim3Q9R1R2 Gm6311-201ENSMUST00000073790 878 ntBASIC21.07■□□□□ 0.96
Trim3Q9R1R2 Gm4799-201ENSMUST00000095396 657 ntBASIC21.07■□□□□ 0.96
Trim3Q9R1R2 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim3Q9R1R2 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Trim3Q9R1R2 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC21.06■□□□□ 0.96
Trim3Q9R1R2 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
Trim3Q9R1R2 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim3Q9R1R2 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim3Q9R1R2 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim3Q9R1R2 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Gm17641-201ENSMUST00000166328 2350 ntBASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trim3Q9R1R2 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim3Q9R1R2 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim3Q9R1R2 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Trim3Q9R1R2 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
Trim3Q9R1R2 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim3Q9R1R2 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC21.03■□□□□ 0.96
Trim3Q9R1R2 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim3Q9R1R2 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim3Q9R1R2 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim3Q9R1R2 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC21.02■□□□□ 0.96
Trim3Q9R1R2 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim3Q9R1R2 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Trim3Q9R1R2 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim3Q9R1R2 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC21.01■□□□□ 0.95
Trim3Q9R1R2 AC154454.1-201ENSMUST00000225253 216 ntBASIC21.01■□□□□ 0.95
Trim3Q9R1R2 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim3Q9R1R2 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim3Q9R1R2 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC21■□□□□ 0.95
Trim3Q9R1R2 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Trim3Q9R1R2 Mir3960-201ENSMUST00000198213 73 ntBASIC21■□□□□ 0.95
Trim3Q9R1R2 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim3Q9R1R2 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim3Q9R1R2 Gm13889-201ENSMUST00000099689 1386 ntBASIC20.99■□□□□ 0.95
Trim3Q9R1R2 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim3Q9R1R2 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim3Q9R1R2 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim3Q9R1R2 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC20.99■□□□□ 0.95
Trim3Q9R1R2 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim3Q9R1R2 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim3Q9R1R2 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim3Q9R1R2 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Trim3Q9R1R2 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC20.98■□□□□ 0.95
Trim3Q9R1R2 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Trim3Q9R1R2 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim3Q9R1R2 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms