Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim3Q9R1R2 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
Trim3Q9R1R2 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC21.16■□□□□ 0.98
Trim3Q9R1R2 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim3Q9R1R2 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
Trim3Q9R1R2 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim3Q9R1R2 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim3Q9R1R2 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Trim3Q9R1R2 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Trim3Q9R1R2 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC21.15■□□□□ 0.98
Trim3Q9R1R2 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim3Q9R1R2 Gm14121-201ENSMUST00000121441 1380 ntBASIC21.14■□□□□ 0.98
Trim3Q9R1R2 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Trim3Q9R1R2 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim3Q9R1R2 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim3Q9R1R2 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim3Q9R1R2 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim3Q9R1R2 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC21.13■□□□□ 0.97
Trim3Q9R1R2 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim3Q9R1R2 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim3Q9R1R2 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Trim3Q9R1R2 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim3Q9R1R2 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim3Q9R1R2 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim3Q9R1R2 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim3Q9R1R2 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim3Q9R1R2 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim3Q9R1R2 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim3Q9R1R2 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Trim3Q9R1R2 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim3Q9R1R2 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Trim3Q9R1R2 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim3Q9R1R2 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim3Q9R1R2 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC21.09■□□□□ 0.97
Trim3Q9R1R2 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
Trim3Q9R1R2 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Trim3Q9R1R2 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim3Q9R1R2 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim3Q9R1R2 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC21.08■□□□□ 0.96
Trim3Q9R1R2 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
Trim3Q9R1R2 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim3Q9R1R2 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim3Q9R1R2 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim3Q9R1R2 Gm6311-201ENSMUST00000073790 878 ntBASIC21.07■□□□□ 0.96
Trim3Q9R1R2 Gm4799-201ENSMUST00000095396 657 ntBASIC21.07■□□□□ 0.96
Trim3Q9R1R2 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim3Q9R1R2 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Trim3Q9R1R2 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC21.06■□□□□ 0.96
Trim3Q9R1R2 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
Trim3Q9R1R2 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim3Q9R1R2 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim3Q9R1R2 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim3Q9R1R2 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Gm17641-201ENSMUST00000166328 2350 ntBASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Trim3Q9R1R2 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trim3Q9R1R2 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim3Q9R1R2 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim3Q9R1R2 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Trim3Q9R1R2 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
Trim3Q9R1R2 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim3Q9R1R2 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC21.03■□□□□ 0.96
Trim3Q9R1R2 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim3Q9R1R2 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim3Q9R1R2 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim3Q9R1R2 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC21.02■□□□□ 0.96
Trim3Q9R1R2 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim3Q9R1R2 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Trim3Q9R1R2 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim3Q9R1R2 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC21.01■□□□□ 0.95
Trim3Q9R1R2 AC154454.1-201ENSMUST00000225253 216 ntBASIC21.01■□□□□ 0.95
Trim3Q9R1R2 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim3Q9R1R2 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim3Q9R1R2 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC21■□□□□ 0.95
Trim3Q9R1R2 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Trim3Q9R1R2 Mir3960-201ENSMUST00000198213 73 ntBASIC21■□□□□ 0.95
Trim3Q9R1R2 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim3Q9R1R2 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim3Q9R1R2 Gm13889-201ENSMUST00000099689 1386 ntBASIC20.99■□□□□ 0.95
Trim3Q9R1R2 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim3Q9R1R2 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim3Q9R1R2 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim3Q9R1R2 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC20.99■□□□□ 0.95
Trim3Q9R1R2 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim3Q9R1R2 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim3Q9R1R2 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim3Q9R1R2 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Trim3Q9R1R2 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC20.98■□□□□ 0.95
Trim3Q9R1R2 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Trim3Q9R1R2 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim3Q9R1R2 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 174.8 ms