Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
Cpsf1Q9EPU4 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
Cpsf1Q9EPU4 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC32.2■■■□□ 2.75
Cpsf1Q9EPU4 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC32.2■■■□□ 2.75
Cpsf1Q9EPU4 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
Cpsf1Q9EPU4 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC32.19■■■□□ 2.74
Cpsf1Q9EPU4 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
Cpsf1Q9EPU4 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
Cpsf1Q9EPU4 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
Cpsf1Q9EPU4 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC32.18■■■□□ 2.74
Cpsf1Q9EPU4 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC32.17■■■□□ 2.74
Cpsf1Q9EPU4 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC32.17■■■□□ 2.74
Cpsf1Q9EPU4 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
Cpsf1Q9EPU4 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC32.16■■■□□ 2.74
Cpsf1Q9EPU4 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
Cpsf1Q9EPU4 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
Cpsf1Q9EPU4 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC32.15■■■□□ 2.74
Cpsf1Q9EPU4 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
Cpsf1Q9EPU4 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
Cpsf1Q9EPU4 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
Cpsf1Q9EPU4 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
Cpsf1Q9EPU4 Gm27502-201ENSMUST00000183495 199 ntBASIC32.14■■■□□ 2.74
Cpsf1Q9EPU4 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
Cpsf1Q9EPU4 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
Cpsf1Q9EPU4 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
Cpsf1Q9EPU4 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
Cpsf1Q9EPU4 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
Cpsf1Q9EPU4 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC32.11■■■□□ 2.73
Cpsf1Q9EPU4 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC32.11■■■□□ 2.73
Cpsf1Q9EPU4 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC32.11■■■□□ 2.73
Cpsf1Q9EPU4 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Cpsf1Q9EPU4 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC32.1■■■□□ 2.73
Cpsf1Q9EPU4 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC32.1■■■□□ 2.73
Cpsf1Q9EPU4 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
Cpsf1Q9EPU4 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
Cpsf1Q9EPU4 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC32.09■■■□□ 2.73
Cpsf1Q9EPU4 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC32.09■■■□□ 2.73
Cpsf1Q9EPU4 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
Cpsf1Q9EPU4 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC32.09■■■□□ 2.73
Cpsf1Q9EPU4 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC32.09■■■□□ 2.73
Cpsf1Q9EPU4 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC32.09■■■□□ 2.73
Cpsf1Q9EPU4 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC32.08■■■□□ 2.73
Cpsf1Q9EPU4 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.73
Cpsf1Q9EPU4 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC32.07■■■□□ 2.72
Cpsf1Q9EPU4 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
Cpsf1Q9EPU4 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC32.07■■■□□ 2.72
Cpsf1Q9EPU4 Gm14523-201ENSMUST00000117260 558 ntBASIC32.07■■■□□ 2.72
Cpsf1Q9EPU4 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC32.06■■■□□ 2.72
Cpsf1Q9EPU4 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC32.06■■■□□ 2.72
Cpsf1Q9EPU4 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
Cpsf1Q9EPU4 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC32.06■■■□□ 2.72
Cpsf1Q9EPU4 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
Cpsf1Q9EPU4 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
Cpsf1Q9EPU4 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
Cpsf1Q9EPU4 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC32.04■■■□□ 2.72
Cpsf1Q9EPU4 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC32.04■■■□□ 2.72
Cpsf1Q9EPU4 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC32.03■■■□□ 2.72
Cpsf1Q9EPU4 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
Cpsf1Q9EPU4 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
Cpsf1Q9EPU4 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
Cpsf1Q9EPU4 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC32.02■■■□□ 2.72
Cpsf1Q9EPU4 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC32.01■■■□□ 2.72
Cpsf1Q9EPU4 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC32.01■■■□□ 2.72
Cpsf1Q9EPU4 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
Cpsf1Q9EPU4 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC32■■■□□ 2.71
Cpsf1Q9EPU4 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC32■■■□□ 2.71
Cpsf1Q9EPU4 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC32■■■□□ 2.71
Cpsf1Q9EPU4 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC32■■■□□ 2.71
Cpsf1Q9EPU4 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC32■■■□□ 2.71
Cpsf1Q9EPU4 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Cpsf1Q9EPU4 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
Cpsf1Q9EPU4 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC31.99■■■□□ 2.71
Cpsf1Q9EPU4 Gm7332-201ENSMUST00000118351 454 ntBASIC31.98■■■□□ 2.71
Cpsf1Q9EPU4 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
Cpsf1Q9EPU4 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
Cpsf1Q9EPU4 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Cpsf1Q9EPU4 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
Cpsf1Q9EPU4 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
Cpsf1Q9EPU4 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
Cpsf1Q9EPU4 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC31.96■■■□□ 2.71
Cpsf1Q9EPU4 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC31.95■■■□□ 2.7
Cpsf1Q9EPU4 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC31.95■■■□□ 2.7
Cpsf1Q9EPU4 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC31.95■■■□□ 2.7
Cpsf1Q9EPU4 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC31.94■■■□□ 2.7
Cpsf1Q9EPU4 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC31.94■■■□□ 2.7
Cpsf1Q9EPU4 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Cpsf1Q9EPU4 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC31.93■■■□□ 2.7
Cpsf1Q9EPU4 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC31.93■■■□□ 2.7
Cpsf1Q9EPU4 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
Cpsf1Q9EPU4 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
Cpsf1Q9EPU4 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC31.92■■■□□ 2.7
Cpsf1Q9EPU4 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Cpsf1Q9EPU4 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
Cpsf1Q9EPU4 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Cpsf1Q9EPU4 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC31.92■■■□□ 2.7
Cpsf1Q9EPU4 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
Cpsf1Q9EPU4 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
Cpsf1Q9EPU4 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC31.92■■■□□ 2.7
Cpsf1Q9EPU4 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
Cpsf1Q9EPU4 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Retrieved 100 of 76,532 protein–RNA pairs in 9.1 ms