Protein–RNA interactions for Protein: Q99M54

Cdca3, Cell division cycle-associated protein 3, mousemouse

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdca3Q99M54 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cdca3Q99M54 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Cdca3Q99M54 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Cdca3Q99M54 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cdca3Q99M54 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Cdca3Q99M54 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cdca3Q99M54 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Cdca3Q99M54 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cdca3Q99M54 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cdca3Q99M54 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cdca3Q99M54 Gm16437-201ENSMUST00000025669 507 ntBASIC20.93■□□□□ 0.94
Cdca3Q99M54 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Cdca3Q99M54 Gm4799-201ENSMUST00000095396 657 ntBASIC20.93■□□□□ 0.94
Cdca3Q99M54 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Cdca3Q99M54 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cdca3Q99M54 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Cdca3Q99M54 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cdca3Q99M54 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cdca3Q99M54 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Cdca3Q99M54 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Cdca3Q99M54 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cdca3Q99M54 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Cdca3Q99M54 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cdca3Q99M54 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Cdca3Q99M54 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cdca3Q99M54 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cdca3Q99M54 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cdca3Q99M54 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cdca3Q99M54 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cdca3Q99M54 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cdca3Q99M54 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cdca3Q99M54 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cdca3Q99M54 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cdca3Q99M54 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cdca3Q99M54 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cdca3Q99M54 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cdca3Q99M54 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cdca3Q99M54 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Cdca3Q99M54 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC20.86■□□□□ 0.93
Cdca3Q99M54 Pkd1-207ENSMUST00000228550 1050 ntBASIC20.86■□□□□ 0.93
Cdca3Q99M54 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cdca3Q99M54 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cdca3Q99M54 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cdca3Q99M54 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC20.84■□□□□ 0.93
Cdca3Q99M54 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC20.84■□□□□ 0.93
Cdca3Q99M54 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Cdca3Q99M54 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cdca3Q99M54 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cdca3Q99M54 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cdca3Q99M54 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cdca3Q99M54 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
Cdca3Q99M54 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Cdca3Q99M54 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cdca3Q99M54 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cdca3Q99M54 Gm7332-201ENSMUST00000118351 454 ntBASIC20.82■□□□□ 0.92
Cdca3Q99M54 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC20.82■□□□□ 0.92
Cdca3Q99M54 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cdca3Q99M54 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cdca3Q99M54 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cdca3Q99M54 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC20.81■□□□□ 0.92
Cdca3Q99M54 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.81■□□□□ 0.92
Cdca3Q99M54 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cdca3Q99M54 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Cdca3Q99M54 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cdca3Q99M54 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cdca3Q99M54 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cdca3Q99M54 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cdca3Q99M54 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Cdca3Q99M54 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
Cdca3Q99M54 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Cdca3Q99M54 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cdca3Q99M54 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cdca3Q99M54 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Cdca3Q99M54 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC20.78■□□□□ 0.92
Cdca3Q99M54 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cdca3Q99M54 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cdca3Q99M54 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cdca3Q99M54 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cdca3Q99M54 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Cdca3Q99M54 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Cdca3Q99M54 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cdca3Q99M54 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cdca3Q99M54 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC20.76■□□□□ 0.91
Cdca3Q99M54 Gm27502-201ENSMUST00000183495 199 ntBASIC20.76■□□□□ 0.91
Cdca3Q99M54 AC154454.1-201ENSMUST00000225253 216 ntBASIC20.76■□□□□ 0.91
Cdca3Q99M54 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cdca3Q99M54 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Cdca3Q99M54 Il17rd-202ENSMUST00000223942 2186 ntBASIC20.76■□□□□ 0.91
Cdca3Q99M54 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Cdca3Q99M54 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cdca3Q99M54 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cdca3Q99M54 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cdca3Q99M54 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cdca3Q99M54 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC20.75■□□□□ 0.91
Cdca3Q99M54 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cdca3Q99M54 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cdca3Q99M54 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cdca3Q99M54 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Cdca3Q99M54 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Cdca3Q99M54 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 14.8 ms