Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC19.48■□□□□ 0.71
Col8a1Q00780 Nsd1-203ENSMUST00000224156 1149 ntBASIC19.48■□□□□ 0.71
Col8a1Q00780 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col8a1Q00780 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col8a1Q00780 Terc-201ENSMUST00000082862 423 ntBASIC19.48■□□□□ 0.71
Col8a1Q00780 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Col8a1Q00780 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col8a1Q00780 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Col8a1Q00780 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC19.47■□□□□ 0.71
Col8a1Q00780 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Col8a1Q00780 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col8a1Q00780 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC19.47■□□□□ 0.71
Col8a1Q00780 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col8a1Q00780 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC19.46■□□□□ 0.71
Col8a1Q00780 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col8a1Q00780 Gm9959-201ENSMUST00000068277 390 ntBASIC19.46■□□□□ 0.71
Col8a1Q00780 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col8a1Q00780 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col8a1Q00780 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col8a1Q00780 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC19.45■□□□□ 0.7
Col8a1Q00780 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col8a1Q00780 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC19.44■□□□□ 0.7
Col8a1Q00780 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col8a1Q00780 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC19.44■□□□□ 0.7
Col8a1Q00780 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Col8a1Q00780 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col8a1Q00780 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Col8a1Q00780 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
Col8a1Q00780 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col8a1Q00780 Gm43566-201ENSMUST00000196851 808 ntBASIC19.43■□□□□ 0.7
Col8a1Q00780 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col8a1Q00780 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Col8a1Q00780 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
Col8a1Q00780 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col8a1Q00780 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Col8a1Q00780 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC19.42■□□□□ 0.7
Col8a1Q00780 Gm6206-201ENSMUST00000133472 2199 ntBASIC19.42■□□□□ 0.7
Col8a1Q00780 Gm45444-201ENSMUST00000211394 898 ntBASIC19.41■□□□□ 0.7
Col8a1Q00780 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col8a1Q00780 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col8a1Q00780 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col8a1Q00780 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC19.41■□□□□ 0.7
Col8a1Q00780 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col8a1Q00780 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col8a1Q00780 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC19.4■□□□□ 0.7
Col8a1Q00780 Gm42501-201ENSMUST00000200220 1026 ntBASIC19.4■□□□□ 0.7
Col8a1Q00780 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col8a1Q00780 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC19.4■□□□□ 0.7
Col8a1Q00780 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col8a1Q00780 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Col8a1Q00780 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col8a1Q00780 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col8a1Q00780 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Col8a1Q00780 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Col8a1Q00780 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Col8a1Q00780 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col8a1Q00780 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col8a1Q00780 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Col8a1Q00780 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC19.37■□□□□ 0.69
Col8a1Q00780 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC19.37■□□□□ 0.69
Col8a1Q00780 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col8a1Q00780 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col8a1Q00780 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Col8a1Q00780 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Col8a1Q00780 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Col8a1Q00780 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col8a1Q00780 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col8a1Q00780 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col8a1Q00780 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col8a1Q00780 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col8a1Q00780 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col8a1Q00780 Serp2-204ENSMUST00000228055 705 ntBASIC19.34■□□□□ 0.69
Col8a1Q00780 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col8a1Q00780 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col8a1Q00780 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col8a1Q00780 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col8a1Q00780 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col8a1Q00780 Gm43592-201ENSMUST00000196922 1165 ntBASIC19.33■□□□□ 0.68
Col8a1Q00780 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC19.33■□□□□ 0.68
Col8a1Q00780 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col8a1Q00780 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC19.33■□□□□ 0.68
Col8a1Q00780 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col8a1Q00780 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
Col8a1Q00780 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.32■□□□□ 0.68
Col8a1Q00780 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col8a1Q00780 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
Col8a1Q00780 Gm44428-201ENSMUST00000204474 874 ntBASIC19.31■□□□□ 0.68
Col8a1Q00780 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Col8a1Q00780 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col8a1Q00780 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC19.3■□□□□ 0.68
Col8a1Q00780 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.3■□□□□ 0.68
Col8a1Q00780 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Col8a1Q00780 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col8a1Q00780 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col8a1Q00780 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Col8a1Q00780 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col8a1Q00780 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col8a1Q00780 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Col8a1Q00780 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC19.29■□□□□ 0.68
Col8a1Q00780 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms