Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC31.96■■■□□ 2.71
Col18a1P39061 Nsd1-203ENSMUST00000224156 1149 ntBASIC31.96■■■□□ 2.71
Col18a1P39061 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC31.96■■■□□ 2.71
Col18a1P39061 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
Col18a1P39061 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
Col18a1P39061 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
Col18a1P39061 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
Col18a1P39061 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC31.95■■■□□ 2.71
Col18a1P39061 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Col18a1P39061 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Col18a1P39061 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC31.94■■■□□ 2.7
Col18a1P39061 Gm9959-201ENSMUST00000068277 390 ntBASIC31.94■■■□□ 2.7
Col18a1P39061 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC31.93■■■□□ 2.7
Col18a1P39061 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
Col18a1P39061 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Col18a1P39061 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Col18a1P39061 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC31.92■■■□□ 2.7
Col18a1P39061 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC31.92■■■□□ 2.7
Col18a1P39061 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Col18a1P39061 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC31.9■■■□□ 2.7
Col18a1P39061 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Col18a1P39061 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC31.89■■■□□ 2.7
Col18a1P39061 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Col18a1P39061 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Col18a1P39061 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC31.89■■■□□ 2.69
Col18a1P39061 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC31.88■■■□□ 2.69
Col18a1P39061 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC31.87■■■□□ 2.69
Col18a1P39061 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC31.87■■■□□ 2.69
Col18a1P39061 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
Col18a1P39061 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Col18a1P39061 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
Col18a1P39061 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
Col18a1P39061 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC31.86■■■□□ 2.69
Col18a1P39061 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC31.86■■■□□ 2.69
Col18a1P39061 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC31.85■■■□□ 2.69
Col18a1P39061 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Col18a1P39061 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Col18a1P39061 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Col18a1P39061 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC31.84■■■□□ 2.69
Col18a1P39061 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC31.83■■■□□ 2.69
Col18a1P39061 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Col18a1P39061 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC31.81■■■□□ 2.68
Col18a1P39061 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC31.81■■■□□ 2.68
Col18a1P39061 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC31.81■■■□□ 2.68
Col18a1P39061 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Col18a1P39061 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC31.79■■■□□ 2.68
Col18a1P39061 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
Col18a1P39061 Gm42501-201ENSMUST00000200220 1026 ntBASIC31.79■■■□□ 2.68
Col18a1P39061 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Col18a1P39061 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC31.78■■■□□ 2.68
Col18a1P39061 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Col18a1P39061 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC31.78■■■□□ 2.68
Col18a1P39061 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Col18a1P39061 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC31.77■■■□□ 2.68
Col18a1P39061 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
Col18a1P39061 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC31.77■■■□□ 2.68
Col18a1P39061 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Col18a1P39061 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Col18a1P39061 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
Col18a1P39061 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
Col18a1P39061 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
Col18a1P39061 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC31.76■■■□□ 2.67
Col18a1P39061 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC31.75■■■□□ 2.67
Col18a1P39061 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
Col18a1P39061 Gm18755-201ENSMUST00000218030 1099 ntBASIC31.73■■■□□ 2.67
Col18a1P39061 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC31.73■■■□□ 2.67
Col18a1P39061 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC31.73■■■□□ 2.67
Col18a1P39061 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC31.73■■■□□ 2.67
Col18a1P39061 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Col18a1P39061 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Col18a1P39061 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Col18a1P39061 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Col18a1P39061 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Col18a1P39061 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Col18a1P39061 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Col18a1P39061 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Col18a1P39061 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Col18a1P39061 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC31.65■■■□□ 2.66
Col18a1P39061 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
Col18a1P39061 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC31.64■■■□□ 2.66
Col18a1P39061 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC31.64■■■□□ 2.66
Col18a1P39061 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Col18a1P39061 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
Col18a1P39061 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC31.62■■■□□ 2.65
Col18a1P39061 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Col18a1P39061 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Col18a1P39061 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
Col18a1P39061 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Col18a1P39061 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Col18a1P39061 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC31.61■■■□□ 2.65
Col18a1P39061 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC31.6■■■□□ 2.65
Col18a1P39061 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC31.6■■■□□ 2.65
Col18a1P39061 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC31.59■■■□□ 2.65
Col18a1P39061 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
Col18a1P39061 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC31.58■■■□□ 2.65
Col18a1P39061 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Col18a1P39061 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC31.58■■■□□ 2.65
Col18a1P39061 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Col18a1P39061 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.65
Col18a1P39061 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms