Protein–RNA interactions for Protein: O35188

Cx3cl1, Fractalkine, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cx3cl1O35188 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Cx3cl1O35188 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Cx3cl1O35188 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cx3cl1O35188 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cx3cl1O35188 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cx3cl1O35188 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
Cx3cl1O35188 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC21.22■□□□□ 0.99
Cx3cl1O35188 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cx3cl1O35188 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cx3cl1O35188 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cx3cl1O35188 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC21.21■□□□□ 0.99
Cx3cl1O35188 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cx3cl1O35188 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC21.21■□□□□ 0.99
Cx3cl1O35188 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Cx3cl1O35188 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cx3cl1O35188 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Cx3cl1O35188 AC153911.1-201ENSMUST00000220378 758 ntBASIC21.2■□□□□ 0.98
Cx3cl1O35188 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cx3cl1O35188 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Cx3cl1O35188 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cx3cl1O35188 Gm11175-201ENSMUST00000116172 543 ntBASIC21.19■□□□□ 0.98
Cx3cl1O35188 Scarna2-201ENSMUST00000157560 414 ntBASIC21.19■□□□□ 0.98
Cx3cl1O35188 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Cx3cl1O35188 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Cx3cl1O35188 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cx3cl1O35188 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cx3cl1O35188 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cx3cl1O35188 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cx3cl1O35188 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cx3cl1O35188 Gm9806-201ENSMUST00000051080 552 ntBASIC21.17■□□□□ 0.98
Cx3cl1O35188 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Cx3cl1O35188 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cx3cl1O35188 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cx3cl1O35188 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cx3cl1O35188 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cx3cl1O35188 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cx3cl1O35188 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cx3cl1O35188 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cx3cl1O35188 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cx3cl1O35188 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cx3cl1O35188 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cx3cl1O35188 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cx3cl1O35188 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Cx3cl1O35188 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Cx3cl1O35188 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Cx3cl1O35188 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cx3cl1O35188 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cx3cl1O35188 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Cx3cl1O35188 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Cx3cl1O35188 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Cx3cl1O35188 Gm16437-201ENSMUST00000025669 507 ntBASIC21.13■□□□□ 0.97
Cx3cl1O35188 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cx3cl1O35188 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Cx3cl1O35188 Terc-201ENSMUST00000082862 423 ntBASIC21.13■□□□□ 0.97
Cx3cl1O35188 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cx3cl1O35188 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cx3cl1O35188 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC21.12■□□□□ 0.97
Cx3cl1O35188 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC21.12■□□□□ 0.97
Cx3cl1O35188 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Cx3cl1O35188 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cx3cl1O35188 Gm9910-201ENSMUST00000195385 1550 ntBASIC21.11■□□□□ 0.97
Cx3cl1O35188 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cx3cl1O35188 Gm11687-201ENSMUST00000118911 886 ntBASIC21.11■□□□□ 0.97
Cx3cl1O35188 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cx3cl1O35188 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cx3cl1O35188 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cx3cl1O35188 Mir6538-201ENSMUST00000183713 110 ntBASIC21.09■□□□□ 0.97
Cx3cl1O35188 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Cx3cl1O35188 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cx3cl1O35188 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cx3cl1O35188 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cx3cl1O35188 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cx3cl1O35188 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cx3cl1O35188 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
Cx3cl1O35188 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cx3cl1O35188 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
Cx3cl1O35188 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
Cx3cl1O35188 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC21.07■□□□□ 0.96
Cx3cl1O35188 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Cx3cl1O35188 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Cx3cl1O35188 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC21.07■□□□□ 0.96
Cx3cl1O35188 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cx3cl1O35188 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cx3cl1O35188 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Cx3cl1O35188 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Cx3cl1O35188 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Cx3cl1O35188 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cx3cl1O35188 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cx3cl1O35188 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cx3cl1O35188 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC21.06■□□□□ 0.96
Cx3cl1O35188 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC21.06■□□□□ 0.96
Cx3cl1O35188 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cx3cl1O35188 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cx3cl1O35188 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cx3cl1O35188 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cx3cl1O35188 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Cx3cl1O35188 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC21.04■□□□□ 0.96
Cx3cl1O35188 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Cx3cl1O35188 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cx3cl1O35188 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 50.9 ms