Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC14.04□□□□□ -0.16
Pcdh1F7BJK1 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Pcdh1F7BJK1 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Pcdh1F7BJK1 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Pcdh1F7BJK1 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Pcdh1F7BJK1 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 AC134329.2-201ENSMUST00000217897 428 ntBASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Gm21559-201ENSMUST00000220638 855 ntBASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Gm8587-201ENSMUST00000076538 843 ntBASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Pcdh1F7BJK1 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
Pcdh1F7BJK1 Gm45133-201ENSMUST00000207548 2773 ntBASIC14.02□□□□□ -0.16
Pcdh1F7BJK1 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pcdh1F7BJK1 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Pcdh1F7BJK1 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pcdh1F7BJK1 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pcdh1F7BJK1 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pcdh1F7BJK1 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC14.02□□□□□ -0.16
Pcdh1F7BJK1 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC14.02□□□□□ -0.16
Pcdh1F7BJK1 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pcdh1F7BJK1 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Gm27389-201ENSMUST00000183622 195 ntBASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pcdh1F7BJK1 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 AC114585.2-202ENSMUST00000228094 426 ntBASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Gm7367-201ENSMUST00000057611 492 ntBASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pcdh1F7BJK1 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms