Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC17.72■□□□□ 0.43
Usp28Q5I043 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Usp28Q5I043 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Gm27742-201ENSMUST00000184667 60 ntBASIC17.72■□□□□ 0.43
Usp28Q5I043 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC17.72■□□□□ 0.43
Usp28Q5I043 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Usp28Q5I043 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp28Q5I043 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp28Q5I043 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp28Q5I043 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp28Q5I043 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Usp28Q5I043 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC17.71■□□□□ 0.43
Usp28Q5I043 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp28Q5I043 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp28Q5I043 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp28Q5I043 Gm4609-201ENSMUST00000106443 1002 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC17.71■□□□□ 0.43
Usp28Q5I043 Gm5138-201ENSMUST00000113842 1002 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Gm15191-201ENSMUST00000117933 1000 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Gm12182-201ENSMUST00000118655 1008 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Gm13882-201ENSMUST00000120886 1002 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Gm10284-201ENSMUST00000145057 1005 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Gm10481-201ENSMUST00000179228 1002 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Gm2574-201ENSMUST00000181051 1002 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Gm3200-201ENSMUST00000181493 1002 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Gm8825-201ENSMUST00000182565 998 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Gm4518-201ENSMUST00000182638 718 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Gm8330-201ENSMUST00000182754 1008 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Gm4575-201ENSMUST00000182991 1002 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Gm8709-201ENSMUST00000183230 1012 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Usp28Q5I043 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp28Q5I043 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC17.71■□□□□ 0.43
Usp28Q5I043 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC17.71■□□□□ 0.43
Usp28Q5I043 AC154471.1-201ENSMUST00000224418 436 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Gm10293-201ENSMUST00000076317 1002 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Gm6316-201ENSMUST00000082064 1020 ntBASIC17.71■□□□□ 0.43
Usp28Q5I043 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp28Q5I043 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Usp28Q5I043 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC17.71■□□□□ 0.43
Usp28Q5I043 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Usp28Q5I043 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp28Q5I043 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp28Q5I043 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp28Q5I043 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp28Q5I043 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC17.7■□□□□ 0.42
Usp28Q5I043 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp28Q5I043 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Usp28Q5I043 Mir7071-201ENSMUST00000184847 69 ntBASIC17.7■□□□□ 0.42
Usp28Q5I043 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Usp28Q5I043 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC17.7■□□□□ 0.42
Usp28Q5I043 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp28Q5I043 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Usp28Q5I043 AC117588.1-201ENSMUST00000228510 999 ntBASIC17.7■□□□□ 0.42
Usp28Q5I043 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC17.7■□□□□ 0.42
Usp28Q5I043 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp28Q5I043 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Usp28Q5I043 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp28Q5I043 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Usp28Q5I043 Gm43352-201ENSMUST00000196419 3065 ntBASIC17.7■□□□□ 0.42
Usp28Q5I043 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp28Q5I043 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp28Q5I043 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Usp28Q5I043 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Usp28Q5I043 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp28Q5I043 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC17.69■□□□□ 0.42
Usp28Q5I043 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp28Q5I043 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp28Q5I043 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp28Q5I043 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp28Q5I043 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Usp28Q5I043 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Usp28Q5I043 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC17.69■□□□□ 0.42
Usp28Q5I043 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp28Q5I043 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms