Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Gm37736-201ENSMUST00000193564 2802 ntBASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Gm29707-201ENSMUST00000196325 491 ntBASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col28a1Q2UY11 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Gm17808-201ENSMUST00000200859 894 ntBASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col28a1Q2UY11 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Gm43352-201ENSMUST00000196419 3065 ntBASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Gm7213-201ENSMUST00000215977 950 ntBASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 44.1 ms