Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Lire1P11260 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Lire1P11260 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
Lire1P11260 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Lire1P11260 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC14.78□□□□□ -0.04
Lire1P11260 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC14.78□□□□□ -0.04
Lire1P11260 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Gm28659-201ENSMUST00000188013 759 ntBASIC14.78□□□□□ -0.04
Lire1P11260 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC14.78□□□□□ -0.04
Lire1P11260 AC164629.2-201ENSMUST00000217916 270 ntBASIC14.78□□□□□ -0.04
Lire1P11260 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC14.78□□□□□ -0.04
Lire1P11260 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC14.78□□□□□ -0.04
Lire1P11260 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC14.78□□□□□ -0.04
Lire1P11260 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Lire1P11260 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lire1P11260 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lire1P11260 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lire1P11260 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC14.77□□□□□ -0.04
Lire1P11260 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lire1P11260 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.04
Lire1P11260 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lire1P11260 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lire1P11260 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lire1P11260 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lire1P11260 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lire1P11260 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
Lire1P11260 Gm27000-201ENSMUST00000182943 842 ntBASIC14.77□□□□□ -0.05
Lire1P11260 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Lire1P11260 Gm6443-201ENSMUST00000203599 874 ntBASIC14.77□□□□□ -0.05
Lire1P11260 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lire1P11260 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lire1P11260 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lire1P11260 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lire1P11260 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lire1P11260 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lire1P11260 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lire1P11260 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lire1P11260 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lire1P11260 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.05
Lire1P11260 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Lire1P11260 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Lire1P11260 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lire1P11260 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Lire1P11260 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lire1P11260 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Lire1P11260 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lire1P11260 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lire1P11260 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lire1P11260 Gm11841-201ENSMUST00000117060 1963 ntBASIC14.76□□□□□ -0.05
Lire1P11260 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC14.76□□□□□ -0.05
Lire1P11260 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Lire1P11260 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Lire1P11260 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Lire1P11260 Gm11620-201ENSMUST00000118770 1845 ntBASIC14.76□□□□□ -0.05
Lire1P11260 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
Lire1P11260 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lire1P11260 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Lire1P11260 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lire1P11260 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lire1P11260 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lire1P11260 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lire1P11260 Olfr129-201ENSMUST00000122318 993 ntBASIC14.76□□□□□ -0.05
Lire1P11260 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
Lire1P11260 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC14.76□□□□□ -0.05
Lire1P11260 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC14.76□□□□□ -0.05
Lire1P11260 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lire1P11260 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Lire1P11260 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lire1P11260 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC14.76□□□□□ -0.05
Lire1P11260 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lire1P11260 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
Lire1P11260 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lire1P11260 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lire1P11260 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lire1P11260 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lire1P11260 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lire1P11260 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Lire1P11260 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Lire1P11260 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC14.75□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms