Protein–RNA interactions for Protein: O55055

Trdmt1, tRNA (cytosine(38)-C(5))-methyltransferase, mousemouse

Predictions only

Length 415 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trdmt1O55055 Gm7901-201ENSMUST00000120430 1597 ntBASIC17.11■□□□□ 0.33
Trdmt1O55055 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trdmt1O55055 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trdmt1O55055 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trdmt1O55055 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trdmt1O55055 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Trdmt1O55055 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trdmt1O55055 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC17.11■□□□□ 0.33
Trdmt1O55055 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Trdmt1O55055 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trdmt1O55055 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trdmt1O55055 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC17.11■□□□□ 0.33
Trdmt1O55055 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trdmt1O55055 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC17.11■□□□□ 0.33
Trdmt1O55055 CT025555.1-201ENSMUST00000225901 1217 ntBASIC17.11■□□□□ 0.33
Trdmt1O55055 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trdmt1O55055 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trdmt1O55055 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
Trdmt1O55055 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trdmt1O55055 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trdmt1O55055 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trdmt1O55055 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Trdmt1O55055 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC17.1■□□□□ 0.33
Trdmt1O55055 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC17.1■□□□□ 0.33
Trdmt1O55055 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC17.1■□□□□ 0.33
Trdmt1O55055 Gm20949-201ENSMUST00000206478 952 ntBASIC17.1■□□□□ 0.33
Trdmt1O55055 Gm18057-201ENSMUST00000208220 503 ntBASIC17.1■□□□□ 0.33
Trdmt1O55055 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC17.1■□□□□ 0.33
Trdmt1O55055 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC17.1■□□□□ 0.33
Trdmt1O55055 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC17.1■□□□□ 0.33
Trdmt1O55055 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC17.1■□□□□ 0.33
Trdmt1O55055 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trdmt1O55055 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Trdmt1O55055 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 CT025626.1-201ENSMUST00000223735 1455 ntBASIC17.1■□□□□ 0.33
Trdmt1O55055 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Trdmt1O55055 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
Trdmt1O55055 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trdmt1O55055 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trdmt1O55055 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trdmt1O55055 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trdmt1O55055 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trdmt1O55055 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trdmt1O55055 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trdmt1O55055 Mir449b-201ENSMUST00000104833 80 ntBASIC17.09■□□□□ 0.33
Trdmt1O55055 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC17.09■□□□□ 0.33
Trdmt1O55055 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC17.09■□□□□ 0.33
Trdmt1O55055 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC17.09■□□□□ 0.33
Trdmt1O55055 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC17.09■□□□□ 0.33
Trdmt1O55055 Gm10154-201ENSMUST00000084445 354 ntBASIC17.09■□□□□ 0.33
Trdmt1O55055 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
Trdmt1O55055 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC17.09■□□□□ 0.33
Trdmt1O55055 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trdmt1O55055 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Trdmt1O55055 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Trdmt1O55055 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trdmt1O55055 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trdmt1O55055 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trdmt1O55055 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trdmt1O55055 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trdmt1O55055 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Trdmt1O55055 Gm5421-201ENSMUST00000181698 2354 ntBASIC17.08■□□□□ 0.33
Trdmt1O55055 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
Trdmt1O55055 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Trdmt1O55055 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Trdmt1O55055 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.33
Trdmt1O55055 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trdmt1O55055 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC17.08■□□□□ 0.32
Trdmt1O55055 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC17.08■□□□□ 0.32
Trdmt1O55055 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC17.08■□□□□ 0.32
Trdmt1O55055 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trdmt1O55055 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trdmt1O55055 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC17.08■□□□□ 0.32
Trdmt1O55055 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trdmt1O55055 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trdmt1O55055 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trdmt1O55055 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trdmt1O55055 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trdmt1O55055 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trdmt1O55055 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trdmt1O55055 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trdmt1O55055 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trdmt1O55055 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms