Protein–RNA interactions for Protein: Q8CHD8

Rab11fip3, Rab11 family-interacting protein 3, mousemouse

Predictions only

Length 1,047 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rab11fip3Q8CHD8 Gm45412-201ENSMUST00000210217 2275 ntBASIC20.2■□□□□ 0.82
Rab11fip3Q8CHD8 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC20.2■□□□□ 0.82
Rab11fip3Q8CHD8 Gm13337-201ENSMUST00000119183 1594 ntBASIC20.2■□□□□ 0.82
Rab11fip3Q8CHD8 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rab11fip3Q8CHD8 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Rab11fip3Q8CHD8 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rab11fip3Q8CHD8 Gm26917-202ENSMUST00000192833 3329 ntBASIC20.2■□□□□ 0.82
Rab11fip3Q8CHD8 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rab11fip3Q8CHD8 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Rab11fip3Q8CHD8 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rab11fip3Q8CHD8 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Rab11fip3Q8CHD8 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rab11fip3Q8CHD8 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rab11fip3Q8CHD8 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC20.19■□□□□ 0.82
Rab11fip3Q8CHD8 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rab11fip3Q8CHD8 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rab11fip3Q8CHD8 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Rab11fip3Q8CHD8 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC20.19■□□□□ 0.82
Rab11fip3Q8CHD8 AC154572.2-201ENSMUST00000225105 997 ntBASIC20.19■□□□□ 0.82
Rab11fip3Q8CHD8 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Rab11fip3Q8CHD8 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rab11fip3Q8CHD8 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rab11fip3Q8CHD8 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Rab11fip3Q8CHD8 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rab11fip3Q8CHD8 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Rab11fip3Q8CHD8 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rab11fip3Q8CHD8 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
Rab11fip3Q8CHD8 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Gm8318-201ENSMUST00000182954 872 ntBASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 AC160980.1-201ENSMUST00000224136 970 ntBASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Bloc1s5-203ENSMUST00000224902 612 ntBASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rab11fip3Q8CHD8 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rab11fip3Q8CHD8 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Rab11fip3Q8CHD8 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rab11fip3Q8CHD8 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rab11fip3Q8CHD8 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rab11fip3Q8CHD8 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Rab11fip3Q8CHD8 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Rab11fip3Q8CHD8 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Rab11fip3Q8CHD8 Mir7036b-201ENSMUST00000184791 63 ntBASIC20.17■□□□□ 0.82
Rab11fip3Q8CHD8 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rab11fip3Q8CHD8 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC20.17■□□□□ 0.82
Rab11fip3Q8CHD8 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Rab11fip3Q8CHD8 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Rab11fip3Q8CHD8 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rab11fip3Q8CHD8 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rab11fip3Q8CHD8 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rab11fip3Q8CHD8 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rab11fip3Q8CHD8 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rab11fip3Q8CHD8 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC20.16■□□□□ 0.82
Rab11fip3Q8CHD8 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rab11fip3Q8CHD8 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rab11fip3Q8CHD8 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Rab11fip3Q8CHD8 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rab11fip3Q8CHD8 Gm25911-201ENSMUST00000157621 56 ntBASIC20.16■□□□□ 0.82
Rab11fip3Q8CHD8 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Rab11fip3Q8CHD8 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
Rab11fip3Q8CHD8 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Rab11fip3Q8CHD8 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC20.16■□□□□ 0.82
Rab11fip3Q8CHD8 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rab11fip3Q8CHD8 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Rab11fip3Q8CHD8 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Rab11fip3Q8CHD8 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rab11fip3Q8CHD8 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rab11fip3Q8CHD8 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rab11fip3Q8CHD8 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rab11fip3Q8CHD8 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Rab11fip3Q8CHD8 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rab11fip3Q8CHD8 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rab11fip3Q8CHD8 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rab11fip3Q8CHD8 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Rab11fip3Q8CHD8 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rab11fip3Q8CHD8 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Rab11fip3Q8CHD8 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rab11fip3Q8CHD8 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rab11fip3Q8CHD8 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Rab11fip3Q8CHD8 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rab11fip3Q8CHD8 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Rab11fip3Q8CHD8 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC20.15■□□□□ 0.82
Rab11fip3Q8CHD8 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rab11fip3Q8CHD8 Gm4913-201ENSMUST00000117075 1290 ntBASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms