Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC17.33■□□□□ 0.37
Col11a1Q61245 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col11a1Q61245 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col11a1Q61245 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC17.33■□□□□ 0.37
Col11a1Q61245 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Col11a1Q61245 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col11a1Q61245 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
Col11a1Q61245 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC17.33■□□□□ 0.36
Col11a1Q61245 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col11a1Q61245 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col11a1Q61245 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC17.33■□□□□ 0.36
Col11a1Q61245 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col11a1Q61245 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
Col11a1Q61245 Gm24543-201ENSMUST00000103867 82 ntBASIC17.33■□□□□ 0.36
Col11a1Q61245 Gm12859-201ENSMUST00000117834 427 ntBASIC17.33■□□□□ 0.36
Col11a1Q61245 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC17.33■□□□□ 0.36
Col11a1Q61245 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC17.33■□□□□ 0.36
Col11a1Q61245 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Col11a1Q61245 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Col11a1Q61245 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col11a1Q61245 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col11a1Q61245 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Col11a1Q61245 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col11a1Q61245 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col11a1Q61245 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col11a1Q61245 Gm5357-201ENSMUST00000212720 1924 ntBASIC17.32■□□□□ 0.36
Col11a1Q61245 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC17.32■□□□□ 0.36
Col11a1Q61245 Gm18766-201ENSMUST00000189811 808 ntBASIC17.32■□□□□ 0.36
Col11a1Q61245 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col11a1Q61245 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col11a1Q61245 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col11a1Q61245 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col11a1Q61245 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col11a1Q61245 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col11a1Q61245 Gm29667-201ENSMUST00000190817 490 ntBASIC17.31■□□□□ 0.36
Col11a1Q61245 Gm18187-201ENSMUST00000196476 984 ntBASIC17.31■□□□□ 0.36
Col11a1Q61245 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col11a1Q61245 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col11a1Q61245 Syt7-204ENSMUST00000223586 1344 ntBASIC17.31■□□□□ 0.36
Col11a1Q61245 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col11a1Q61245 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col11a1Q61245 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Col11a1Q61245 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col11a1Q61245 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col11a1Q61245 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col11a1Q61245 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col11a1Q61245 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col11a1Q61245 Gm42900-201ENSMUST00000197184 2167 ntBASIC17.31■□□□□ 0.36
Col11a1Q61245 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col11a1Q61245 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col11a1Q61245 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col11a1Q61245 Gm14928-201ENSMUST00000120198 477 ntBASIC17.31■□□□□ 0.36
Col11a1Q61245 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC17.31■□□□□ 0.36
Col11a1Q61245 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC17.31■□□□□ 0.36
Col11a1Q61245 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC17.31■□□□□ 0.36
Col11a1Q61245 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col11a1Q61245 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col11a1Q61245 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col11a1Q61245 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col11a1Q61245 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col11a1Q61245 Gm15635-204ENSMUST00000208024 2539 ntBASIC17.3■□□□□ 0.36
Col11a1Q61245 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Col11a1Q61245 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col11a1Q61245 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Col11a1Q61245 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC17.3■□□□□ 0.36
Col11a1Q61245 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col11a1Q61245 Gm15321-201ENSMUST00000121290 288 ntBASIC17.3■□□□□ 0.36
Col11a1Q61245 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col11a1Q61245 Gm9719-201ENSMUST00000162765 543 ntBASIC17.3■□□□□ 0.36
Col11a1Q61245 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col11a1Q61245 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col11a1Q61245 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC17.3■□□□□ 0.36
Col11a1Q61245 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col11a1Q61245 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col11a1Q61245 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col11a1Q61245 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col11a1Q61245 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col11a1Q61245 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC17.29■□□□□ 0.36
Col11a1Q61245 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col11a1Q61245 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC17.29■□□□□ 0.36
Col11a1Q61245 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Col11a1Q61245 CT010506.4-201ENSMUST00000225457 351 ntBASIC17.29■□□□□ 0.36
Col11a1Q61245 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Col11a1Q61245 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col11a1Q61245 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col11a1Q61245 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col11a1Q61245 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col11a1Q61245 Gm13233-201ENSMUST00000118760 1443 ntBASIC17.29■□□□□ 0.36
Col11a1Q61245 Gm13244-201ENSMUST00000118855 1446 ntBASIC17.29■□□□□ 0.36
Col11a1Q61245 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col11a1Q61245 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col11a1Q61245 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col11a1Q61245 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
Col11a1Q61245 Gm6539-201ENSMUST00000119157 1064 ntBASIC17.28■□□□□ 0.36
Col11a1Q61245 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Col11a1Q61245 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC17.28■□□□□ 0.36
Col11a1Q61245 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col11a1Q61245 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col11a1Q61245 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col11a1Q61245 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms