Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col2a1P28481 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Col2a1P28481 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Col2a1P28481 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC17.58■□□□□ 0.41
Col2a1P28481 Gm6973-201ENSMUST00000117080 721 ntBASIC17.58■□□□□ 0.41
Col2a1P28481 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC17.58■□□□□ 0.41
Col2a1P28481 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Col2a1P28481 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC17.58■□□□□ 0.41
Col2a1P28481 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Col2a1P28481 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Col2a1P28481 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
Col2a1P28481 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Col2a1P28481 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Col2a1P28481 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Col2a1P28481 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Col2a1P28481 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Col2a1P28481 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Col2a1P28481 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Col2a1P28481 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col2a1P28481 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Col2a1P28481 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC17.57■□□□□ 0.4
Col2a1P28481 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC17.57■□□□□ 0.4
Col2a1P28481 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC17.57■□□□□ 0.4
Col2a1P28481 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col2a1P28481 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col2a1P28481 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC17.57■□□□□ 0.4
Col2a1P28481 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC17.57■□□□□ 0.4
Col2a1P28481 AC131710.1-201ENSMUST00000228336 990 ntBASIC17.57■□□□□ 0.4
Col2a1P28481 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col2a1P28481 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col2a1P28481 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col2a1P28481 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col2a1P28481 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC17.57■□□□□ 0.4
Col2a1P28481 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col2a1P28481 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col2a1P28481 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Col2a1P28481 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col2a1P28481 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col2a1P28481 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col2a1P28481 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC17.57■□□□□ 0.4
Col2a1P28481 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col2a1P28481 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col2a1P28481 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col2a1P28481 Gm43767-201ENSMUST00000198933 381 ntBASIC17.56■□□□□ 0.4
Col2a1P28481 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC17.56■□□□□ 0.4
Col2a1P28481 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col2a1P28481 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col2a1P28481 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col2a1P28481 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC17.56■□□□□ 0.4
Col2a1P28481 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col2a1P28481 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col2a1P28481 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col2a1P28481 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col2a1P28481 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col2a1P28481 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col2a1P28481 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col2a1P28481 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Col2a1P28481 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col2a1P28481 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col2a1P28481 Gm44872-201ENSMUST00000207864 420 ntBASIC17.56■□□□□ 0.4
Col2a1P28481 AC164567.1-201ENSMUST00000219185 960 ntBASIC17.56■□□□□ 0.4
Col2a1P28481 AC159114.1-201ENSMUST00000220349 266 ntBASIC17.56■□□□□ 0.4
Col2a1P28481 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col2a1P28481 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col2a1P28481 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col2a1P28481 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Col2a1P28481 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col2a1P28481 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col2a1P28481 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col2a1P28481 AC163637.1-201ENSMUST00000215491 1894 ntBASIC17.55■□□□□ 0.4
Col2a1P28481 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Col2a1P28481 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col2a1P28481 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col2a1P28481 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col2a1P28481 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col2a1P28481 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Col2a1P28481 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col2a1P28481 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC17.55■□□□□ 0.4
Col2a1P28481 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
Col2a1P28481 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC17.55■□□□□ 0.4
Col2a1P28481 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col2a1P28481 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col2a1P28481 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Col2a1P28481 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col2a1P28481 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col2a1P28481 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col2a1P28481 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col2a1P28481 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Col2a1P28481 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col2a1P28481 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col2a1P28481 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col2a1P28481 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col2a1P28481 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col2a1P28481 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col2a1P28481 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col2a1P28481 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Col2a1P28481 Gm2810-201ENSMUST00000118681 990 ntBASIC17.54■□□□□ 0.4
Col2a1P28481 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC17.54■□□□□ 0.4
Col2a1P28481 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Col2a1P28481 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms