Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Chd3B1AR17 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chd3B1AR17 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chd3B1AR17 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chd3B1AR17 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chd3B1AR17 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Chd3B1AR17 Gm42901-201ENSMUST00000197735 3171 ntBASIC15.28■□□□□ 0.04
Chd3B1AR17 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chd3B1AR17 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Chd3B1AR17 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC15.28■□□□□ 0.04
Chd3B1AR17 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC15.28■□□□□ 0.04
Chd3B1AR17 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Chd3B1AR17 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chd3B1AR17 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chd3B1AR17 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Chd3B1AR17 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chd3B1AR17 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chd3B1AR17 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chd3B1AR17 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chd3B1AR17 H2af-ps-201ENSMUST00000119066 295 ntBASIC15.28■□□□□ 0.04
Chd3B1AR17 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
Chd3B1AR17 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chd3B1AR17 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chd3B1AR17 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Chd3B1AR17 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Chd3B1AR17 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Chd3B1AR17 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Chd3B1AR17 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Chd3B1AR17 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Chd3B1AR17 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Chd3B1AR17 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Chd3B1AR17 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Chd3B1AR17 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Chd3B1AR17 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Chd3B1AR17 Gm4899-201ENSMUST00000178708 719 ntBASIC15.27■□□□□ 0.03
Chd3B1AR17 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Chd3B1AR17 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Chd3B1AR17 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Chd3B1AR17 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Chd3B1AR17 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Chd3B1AR17 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Chd3B1AR17 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Chd3B1AR17 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Chd3B1AR17 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Chd3B1AR17 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Chd3B1AR17 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Chd3B1AR17 Gm5648-201ENSMUST00000122244 1587 ntBASIC15.27■□□□□ 0.03
Chd3B1AR17 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Chd3B1AR17 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Chd3B1AR17 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Chd3B1AR17 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chd3B1AR17 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Chd3B1AR17 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chd3B1AR17 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC15.26■□□□□ 0.03
Chd3B1AR17 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Chd3B1AR17 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC15.26■□□□□ 0.03
Chd3B1AR17 Gm17968-201ENSMUST00000194902 784 ntBASIC15.26■□□□□ 0.03
Chd3B1AR17 Gm45683-201ENSMUST00000210825 1247 ntBASIC15.26■□□□□ 0.03
Chd3B1AR17 AC090659.1-201ENSMUST00000224334 768 ntBASIC15.26■□□□□ 0.03
Chd3B1AR17 Gm43548-201ENSMUST00000197139 2353 ntBASIC15.26■□□□□ 0.03
Chd3B1AR17 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chd3B1AR17 Gm43072-201ENSMUST00000200283 1671 ntBASIC15.26■□□□□ 0.03
Chd3B1AR17 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chd3B1AR17 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chd3B1AR17 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chd3B1AR17 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chd3B1AR17 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chd3B1AR17 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chd3B1AR17 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chd3B1AR17 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC15.26■□□□□ 0.03
Chd3B1AR17 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chd3B1AR17 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC15.26■□□□□ 0.03
Chd3B1AR17 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC15.26■□□□□ 0.03
Chd3B1AR17 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Chd3B1AR17 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chd3B1AR17 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chd3B1AR17 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Chd3B1AR17 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC15.26■□□□□ 0.03
Chd3B1AR17 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Chd3B1AR17 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC15.26■□□□□ 0.03
Chd3B1AR17 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chd3B1AR17 Gm5366-201ENSMUST00000215494 1338 ntBASIC15.25■□□□□ 0.03
Chd3B1AR17 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC15.25■□□□□ 0.03
Chd3B1AR17 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Chd3B1AR17 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Chd3B1AR17 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC15.25■□□□□ 0.03
Chd3B1AR17 Gm5177-201ENSMUST00000183092 997 ntBASIC15.25■□□□□ 0.03
Chd3B1AR17 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chd3B1AR17 Mir8117-201ENSMUST00000184773 107 ntBASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 11.2 ms