Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 Gm5297-201ENSMUST00000198555 1171 ntBASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RTRAFQ9CQE8 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Gm45779-201ENSMUST00000212189 4064 ntBASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Gm11249-201ENSMUST00000117071 859 ntBASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 AC159205.3-201ENSMUST00000224614 874 ntBASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Rbfox2-206ENSMUST00000227314 1810 ntBASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Actl10-202ENSMUST00000226583 1501 ntBASIC12.78□□□□□ -0.36
RTRAFQ9CQE8 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RTRAFQ9CQE8 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RTRAFQ9CQE8 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
RTRAFQ9CQE8 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
RTRAFQ9CQE8 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
RTRAFQ9CQE8 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
RTRAFQ9CQE8 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
RTRAFQ9CQE8 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
RTRAFQ9CQE8 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
RTRAFQ9CQE8 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RTRAFQ9CQE8 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RTRAFQ9CQE8 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RTRAFQ9CQE8 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Gm14464-201ENSMUST00000119658 1254 ntBASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Gm37292-201ENSMUST00000192062 758 ntBASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
RTRAFQ9CQE8 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms