Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Lsm1Q8VC85 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC15.05■□□□□ -0
Lsm1Q8VC85 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Lsm1Q8VC85 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Lsm1Q8VC85 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Lsm1Q8VC85 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Lsm1Q8VC85 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Lsm1Q8VC85 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Lsm1Q8VC85 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
Lsm1Q8VC85 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC15.04■□□□□ -0
Lsm1Q8VC85 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Gm13312-201ENSMUST00000119631 718 ntBASIC15.04■□□□□ -0
Lsm1Q8VC85 Gm8349-201ENSMUST00000182720 1003 ntBASIC15.04■□□□□ -0
Lsm1Q8VC85 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Lsm1Q8VC85 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Lsm1Q8VC85 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC15.04■□□□□ -0
Lsm1Q8VC85 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Lsm1Q8VC85 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Lsm1Q8VC85 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Lsm1Q8VC85 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Lsm1Q8VC85 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
Lsm1Q8VC85 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Lsm1Q8VC85 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC15.03■□□□□ -0
Lsm1Q8VC85 Gm25406-201ENSMUST00000157599 105 ntBASIC15.03■□□□□ -0
Lsm1Q8VC85 Gm25016-201ENSMUST00000158399 131 ntBASIC15.03■□□□□ -0
Lsm1Q8VC85 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC15.03■□□□□ -0
Lsm1Q8VC85 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Lsm1Q8VC85 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC15.03■□□□□ -0
Lsm1Q8VC85 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
Lsm1Q8VC85 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Lsm1Q8VC85 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Lsm1Q8VC85 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Lsm1Q8VC85 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Lsm1Q8VC85 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC15.03■□□□□ -0
Lsm1Q8VC85 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Lsm1Q8VC85 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Lsm1Q8VC85 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Lsm1Q8VC85 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
Lsm1Q8VC85 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC15.02■□□□□ -0
Lsm1Q8VC85 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Lsm1Q8VC85 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC15.02■□□□□ -0
Lsm1Q8VC85 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Lsm1Q8VC85 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Lsm1Q8VC85 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Lsm1Q8VC85 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC15.02■□□□□ -0
Lsm1Q8VC85 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Lsm1Q8VC85 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC15.02■□□□□ -0
Lsm1Q8VC85 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Lsm1Q8VC85 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC15.02■□□□□ -0
Lsm1Q8VC85 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC15.02■□□□□ -0
Lsm1Q8VC85 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC15.02■□□□□ -0
Lsm1Q8VC85 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC15.02■□□□□ -0
Lsm1Q8VC85 Ighv6-1-201ENSMUST00000193612 343 ntBASIC15.02■□□□□ -0
Lsm1Q8VC85 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
Lsm1Q8VC85 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Lsm1Q8VC85 AC121577.1-201ENSMUST00000227302 707 ntBASIC15.02■□□□□ -0
Lsm1Q8VC85 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
Lsm1Q8VC85 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Lsm1Q8VC85 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Lsm1Q8VC85 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC15.02■□□□□ -0
Lsm1Q8VC85 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lsm1Q8VC85 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lsm1Q8VC85 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
Lsm1Q8VC85 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lsm1Q8VC85 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Lsm1Q8VC85 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lsm1Q8VC85 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lsm1Q8VC85 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Lsm1Q8VC85 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lsm1Q8VC85 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Lsm1Q8VC85 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lsm1Q8VC85 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lsm1Q8VC85 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Lsm1Q8VC85 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lsm1Q8VC85 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lsm1Q8VC85 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lsm1Q8VC85 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
Lsm1Q8VC85 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Lsm1Q8VC85 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC15.01□□□□□ -0.01
Lsm1Q8VC85 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Lsm1Q8VC85 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lsm1Q8VC85 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
Lsm1Q8VC85 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms