Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC17.37■□□□□ 0.37
Col11a1Q61245 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC17.37■□□□□ 0.37
Col11a1Q61245 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Col11a1Q61245 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC17.37■□□□□ 0.37
Col11a1Q61245 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Gm43433-201ENSMUST00000196573 481 ntBASIC17.37■□□□□ 0.37
Col11a1Q61245 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Col11a1Q61245 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC17.37■□□□□ 0.37
Col11a1Q61245 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col11a1Q61245 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col11a1Q61245 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC17.36■□□□□ 0.37
Col11a1Q61245 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col11a1Q61245 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col11a1Q61245 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col11a1Q61245 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col11a1Q61245 Gm14026-201ENSMUST00000120625 1789 ntBASIC17.36■□□□□ 0.37
Col11a1Q61245 Gm38327-201ENSMUST00000195852 1755 ntBASIC17.36■□□□□ 0.37
Col11a1Q61245 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col11a1Q61245 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col11a1Q61245 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC17.36■□□□□ 0.37
Col11a1Q61245 Gm22189-201ENSMUST00000103822 86 ntBASIC17.36■□□□□ 0.37
Col11a1Q61245 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC17.36■□□□□ 0.37
Col11a1Q61245 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col11a1Q61245 AL593843.1-201ENSMUST00000195891 145 ntBASIC17.36■□□□□ 0.37
Col11a1Q61245 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col11a1Q61245 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col11a1Q61245 Gm13337-201ENSMUST00000119183 1594 ntBASIC17.36■□□□□ 0.37
Col11a1Q61245 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col11a1Q61245 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col11a1Q61245 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col11a1Q61245 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC17.36■□□□□ 0.37
Col11a1Q61245 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Col11a1Q61245 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Col11a1Q61245 Gm6218-201ENSMUST00000219812 628 ntBASIC17.35■□□□□ 0.37
Col11a1Q61245 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col11a1Q61245 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Col11a1Q61245 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Col11a1Q61245 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC17.35■□□□□ 0.37
Col11a1Q61245 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Col11a1Q61245 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC17.35■□□□□ 0.37
Col11a1Q61245 Gm12138-201ENSMUST00000122180 951 ntBASIC17.35■□□□□ 0.37
Col11a1Q61245 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC17.35■□□□□ 0.37
Col11a1Q61245 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col11a1Q61245 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col11a1Q61245 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Col11a1Q61245 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col11a1Q61245 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col11a1Q61245 Gm25857-201ENSMUST00000082788 129 ntBASIC17.35■□□□□ 0.37
Col11a1Q61245 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col11a1Q61245 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col11a1Q61245 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col11a1Q61245 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col11a1Q61245 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col11a1Q61245 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col11a1Q61245 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col11a1Q61245 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col11a1Q61245 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col11a1Q61245 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Col11a1Q61245 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col11a1Q61245 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col11a1Q61245 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col11a1Q61245 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col11a1Q61245 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col11a1Q61245 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Col11a1Q61245 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col11a1Q61245 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
Col11a1Q61245 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Col11a1Q61245 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col11a1Q61245 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col11a1Q61245 Asic1-205ENSMUST00000228185 1818 ntBASIC17.34■□□□□ 0.37
Col11a1Q61245 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col11a1Q61245 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Col11a1Q61245 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC17.34■□□□□ 0.37
Col11a1Q61245 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Col11a1Q61245 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Col11a1Q61245 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col11a1Q61245 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC17.33■□□□□ 0.37
Col11a1Q61245 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC17.33■□□□□ 0.37
Col11a1Q61245 Gm43703-201ENSMUST00000200523 763 ntBASIC17.33■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms