Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC18.96■□□□□ 0.63
Ccdc9Q8VC31 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Ccdc9Q8VC31 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc9Q8VC31 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc9Q8VC31 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc9Q8VC31 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc9Q8VC31 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc9Q8VC31 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Ccdc9Q8VC31 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc9Q8VC31 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc9Q8VC31 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Ccdc9Q8VC31 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc9Q8VC31 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Ccdc9Q8VC31 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc9Q8VC31 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc9Q8VC31 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc9Q8VC31 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc9Q8VC31 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc9Q8VC31 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc9Q8VC31 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC18.95■□□□□ 0.62
Ccdc9Q8VC31 Gm44549-201ENSMUST00000208351 577 ntBASIC18.95■□□□□ 0.62
Ccdc9Q8VC31 AC140264.2-202ENSMUST00000218746 817 ntBASIC18.95■□□□□ 0.62
Ccdc9Q8VC31 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc9Q8VC31 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc9Q8VC31 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc9Q8VC31 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc9Q8VC31 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc9Q8VC31 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc9Q8VC31 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc9Q8VC31 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc9Q8VC31 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc9Q8VC31 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC18.94■□□□□ 0.62
Ccdc9Q8VC31 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc9Q8VC31 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc9Q8VC31 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc9Q8VC31 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc9Q8VC31 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc9Q8VC31 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc9Q8VC31 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc9Q8VC31 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc9Q8VC31 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc9Q8VC31 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc9Q8VC31 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
Ccdc9Q8VC31 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc9Q8VC31 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Gm38197-201ENSMUST00000192320 2122 ntBASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc9Q8VC31 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc9Q8VC31 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc9Q8VC31 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc9Q8VC31 Gm37297-201ENSMUST00000192974 2384 ntBASIC18.92■□□□□ 0.62
Ccdc9Q8VC31 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc9Q8VC31 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc9Q8VC31 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc9Q8VC31 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Ccdc9Q8VC31 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc9Q8VC31 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc9Q8VC31 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Ccdc9Q8VC31 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc9Q8VC31 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc9Q8VC31 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc9Q8VC31 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC18.92■□□□□ 0.62
Ccdc9Q8VC31 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Ccdc9Q8VC31 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc9Q8VC31 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
Ccdc9Q8VC31 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc9Q8VC31 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc9Q8VC31 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc9Q8VC31 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc9Q8VC31 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc9Q8VC31 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC18.91■□□□□ 0.62
Ccdc9Q8VC31 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc9Q8VC31 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc9Q8VC31 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc9Q8VC31 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc9Q8VC31 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc9Q8VC31 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc9Q8VC31 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms