Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Gm7222-201ENSMUST00000117512 906 ntBASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Gm13036-201ENSMUST00000117799 748 ntBASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Gm27628-201ENSMUST00000184911 107 ntBASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC17.38■□□□□ 0.37
Trim47Q8C0E3 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Gm42473-201ENSMUST00000201056 2291 ntBASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim47Q8C0E3 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim47Q8C0E3 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trim47Q8C0E3 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trim47Q8C0E3 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim47Q8C0E3 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim47Q8C0E3 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Trim47Q8C0E3 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trim47Q8C0E3 Gm2308-201ENSMUST00000166539 1004 ntBASIC17.37■□□□□ 0.37
Trim47Q8C0E3 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC17.37■□□□□ 0.37
Trim47Q8C0E3 Gm27525-201ENSMUST00000184465 107 ntBASIC17.37■□□□□ 0.37
Trim47Q8C0E3 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim47Q8C0E3 AC127302.2-201ENSMUST00000215212 268 ntBASIC17.37■□□□□ 0.37
Trim47Q8C0E3 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Trim47Q8C0E3 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC17.37■□□□□ 0.37
Trim47Q8C0E3 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Trim47Q8C0E3 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim47Q8C0E3 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim47Q8C0E3 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim47Q8C0E3 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim47Q8C0E3 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim47Q8C0E3 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim47Q8C0E3 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim47Q8C0E3 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Trim47Q8C0E3 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim47Q8C0E3 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim47Q8C0E3 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim47Q8C0E3 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim47Q8C0E3 Gm42790-201ENSMUST00000201268 969 ntBASIC17.36■□□□□ 0.37
Trim47Q8C0E3 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Trim47Q8C0E3 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC17.36■□□□□ 0.37
Trim47Q8C0E3 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim47Q8C0E3 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC17.36■□□□□ 0.37
Trim47Q8C0E3 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
Trim47Q8C0E3 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim47Q8C0E3 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim47Q8C0E3 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC17.35■□□□□ 0.37
Trim47Q8C0E3 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim47Q8C0E3 App-207ENSMUST00000227737 2827 ntBASIC17.34■□□□□ 0.37
Trim47Q8C0E3 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trim47Q8C0E3 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim47Q8C0E3 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim47Q8C0E3 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim47Q8C0E3 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms