Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP41Q3LFD5 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
USP41Q3LFD5 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
USP41Q3LFD5 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP41Q3LFD5 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP41Q3LFD5 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP41Q3LFD5 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP41Q3LFD5 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.74■□□□□ 0.75
USP41Q3LFD5 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.74■□□□□ 0.75
USP41Q3LFD5 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP41Q3LFD5 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.74■□□□□ 0.75
USP41Q3LFD5 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.74■□□□□ 0.75
USP41Q3LFD5 TPSP2-201ENST00000561760 610 ntBASIC19.74■□□□□ 0.75
USP41Q3LFD5 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
USP41Q3LFD5 AC090616.6-201ENST00000582640 721 ntBASIC19.74■□□□□ 0.75
USP41Q3LFD5 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.74■□□□□ 0.75
USP41Q3LFD5 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.74■□□□□ 0.75
USP41Q3LFD5 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP41Q3LFD5 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.74■□□□□ 0.75
USP41Q3LFD5 AL032819.2-201ENST00000624543 2162 ntBASIC19.74■□□□□ 0.75
USP41Q3LFD5 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP41Q3LFD5 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP41Q3LFD5 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP41Q3LFD5 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.74■□□□□ 0.75
USP41Q3LFD5 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP41Q3LFD5 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP41Q3LFD5 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP41Q3LFD5 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.73■□□□□ 0.75
USP41Q3LFD5 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.73■□□□□ 0.75
USP41Q3LFD5 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP41Q3LFD5 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
USP41Q3LFD5 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP41Q3LFD5 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP41Q3LFD5 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.73■□□□□ 0.75
USP41Q3LFD5 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP41Q3LFD5 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.73■□□□□ 0.75
USP41Q3LFD5 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP41Q3LFD5 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.73■□□□□ 0.75
USP41Q3LFD5 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.73■□□□□ 0.75
USP41Q3LFD5 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.73■□□□□ 0.75
USP41Q3LFD5 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.73■□□□□ 0.75
USP41Q3LFD5 RN7SL510P-201ENST00000581311 263 ntBASIC19.73■□□□□ 0.75
USP41Q3LFD5 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP41Q3LFD5 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.73■□□□□ 0.75
USP41Q3LFD5 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP41Q3LFD5 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP41Q3LFD5 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP41Q3LFD5 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP41Q3LFD5 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.73■□□□□ 0.75
USP41Q3LFD5 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP41Q3LFD5 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP41Q3LFD5 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.73■□□□□ 0.75
USP41Q3LFD5 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP41Q3LFD5 Z98044.1-201ENST00000632503 1764 ntBASIC19.72■□□□□ 0.75
USP41Q3LFD5 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP41Q3LFD5 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP41Q3LFD5 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP41Q3LFD5 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
USP41Q3LFD5 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP41Q3LFD5 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.72■□□□□ 0.75
USP41Q3LFD5 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP41Q3LFD5 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.72■□□□□ 0.75
USP41Q3LFD5 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP41Q3LFD5 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.72■□□□□ 0.75
USP41Q3LFD5 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP41Q3LFD5 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP41Q3LFD5 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP41Q3LFD5 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
USP41Q3LFD5 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP41Q3LFD5 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.72■□□□□ 0.75
USP41Q3LFD5 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC19.72■□□□□ 0.75
USP41Q3LFD5 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
USP41Q3LFD5 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP41Q3LFD5 LINC00265-3P-201ENST00000447588 903 ntBASIC19.72■□□□□ 0.75
USP41Q3LFD5 AP000867.3-201ENST00000524675 377 ntBASIC19.72■□□□□ 0.75
USP41Q3LFD5 AL390719.2-201ENST00000606993 987 ntBASIC19.72■□□□□ 0.75
USP41Q3LFD5 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.72■□□□□ 0.75
USP41Q3LFD5 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.72■□□□□ 0.75
USP41Q3LFD5 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP41Q3LFD5 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.72■□□□□ 0.75
USP41Q3LFD5 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.72■□□□□ 0.75
USP41Q3LFD5 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.72■□□□□ 0.75
USP41Q3LFD5 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP41Q3LFD5 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP41Q3LFD5 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
USP41Q3LFD5 HEIH-201ENST00000623091 1652 ntBASIC19.71■□□□□ 0.75
USP41Q3LFD5 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP41Q3LFD5 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP41Q3LFD5 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
USP41Q3LFD5 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.71■□□□□ 0.75
USP41Q3LFD5 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.71■□□□□ 0.75
USP41Q3LFD5 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.71■□□□□ 0.75
USP41Q3LFD5 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP41Q3LFD5 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
USP41Q3LFD5 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP41Q3LFD5 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP41Q3LFD5 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP41Q3LFD5 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.71■□□□□ 0.75
USP41Q3LFD5 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19.71■□□□□ 0.75
USP41Q3LFD5 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms