Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
Col17a1Q07563 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
Col17a1Q07563 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC23.95■■□□□ 1.42
Col17a1Q07563 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Col17a1Q07563 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Col17a1Q07563 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC23.94■■□□□ 1.42
Col17a1Q07563 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Col17a1Q07563 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC23.94■■□□□ 1.42
Col17a1Q07563 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Col17a1Q07563 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Col17a1Q07563 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
Col17a1Q07563 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Col17a1Q07563 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC23.94■■□□□ 1.42
Col17a1Q07563 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Col17a1Q07563 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Col17a1Q07563 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC23.94■■□□□ 1.42
Col17a1Q07563 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC23.94■■□□□ 1.42
Col17a1Q07563 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Col17a1Q07563 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Col17a1Q07563 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Col17a1Q07563 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Col17a1Q07563 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
Col17a1Q07563 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC23.93■■□□□ 1.42
Col17a1Q07563 Gm8096-201ENSMUST00000209921 1591 ntBASIC23.93■■□□□ 1.42
Col17a1Q07563 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Col17a1Q07563 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC23.93■■□□□ 1.42
Col17a1Q07563 Gm43808-201ENSMUST00000202534 2065 ntBASIC23.93■■□□□ 1.42
Col17a1Q07563 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Col17a1Q07563 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC23.93■■□□□ 1.42
Col17a1Q07563 Gm27839-201ENSMUST00000184242 106 ntBASIC23.93■■□□□ 1.42
Col17a1Q07563 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Col17a1Q07563 Ighv8-7-201ENSMUST00000194349 297 ntBASIC23.93■■□□□ 1.42
Col17a1Q07563 Gm44799-201ENSMUST00000207639 1202 ntBASIC23.93■■□□□ 1.42
Col17a1Q07563 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC23.93■■□□□ 1.42
Col17a1Q07563 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Col17a1Q07563 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Col17a1Q07563 Gm5356-201ENSMUST00000093326 615 ntBASIC23.93■■□□□ 1.42
Col17a1Q07563 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Col17a1Q07563 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Col17a1Q07563 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Col17a1Q07563 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Col17a1Q07563 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
Col17a1Q07563 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Col17a1Q07563 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Col17a1Q07563 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Col17a1Q07563 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Col17a1Q07563 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Col17a1Q07563 Mir5132-201ENSMUST00000175166 71 ntBASIC23.92■■□□□ 1.42
Col17a1Q07563 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC23.92■■□□□ 1.42
Col17a1Q07563 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC23.92■■□□□ 1.42
Col17a1Q07563 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC23.92■■□□□ 1.42
Col17a1Q07563 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Col17a1Q07563 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
Col17a1Q07563 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
Col17a1Q07563 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Col17a1Q07563 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
Col17a1Q07563 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Col17a1Q07563 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Col17a1Q07563 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Col17a1Q07563 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Col17a1Q07563 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC23.91■■□□□ 1.42
Col17a1Q07563 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC23.91■■□□□ 1.42
Col17a1Q07563 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC23.91■■□□□ 1.42
Col17a1Q07563 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC23.91■■□□□ 1.42
Col17a1Q07563 Mir7070-201ENSMUST00000183657 86 ntBASIC23.91■■□□□ 1.42
Col17a1Q07563 Gm29199-201ENSMUST00000187766 775 ntBASIC23.91■■□□□ 1.42
Col17a1Q07563 Gm7067-201ENSMUST00000207698 1249 ntBASIC23.91■■□□□ 1.42
Col17a1Q07563 Gm45418-202ENSMUST00000210693 649 ntTSL 5 BASIC23.91■■□□□ 1.42
Col17a1Q07563 Gm46209-201ENSMUST00000217912 553 ntBASIC23.91■■□□□ 1.42
Col17a1Q07563 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
Col17a1Q07563 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
Col17a1Q07563 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Col17a1Q07563 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Col17a1Q07563 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Col17a1Q07563 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
Col17a1Q07563 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Col17a1Q07563 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
Col17a1Q07563 Gm14723-201ENSMUST00000118686 215 ntBASIC23.9■■□□□ 1.42
Col17a1Q07563 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC23.9■■□□□ 1.42
Col17a1Q07563 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Col17a1Q07563 Gm6257-201ENSMUST00000163864 910 ntBASIC23.9■■□□□ 1.42
Col17a1Q07563 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
Col17a1Q07563 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC23.9■■□□□ 1.42
Col17a1Q07563 Gm18934-201ENSMUST00000216671 1044 ntBASIC23.9■■□□□ 1.42
Col17a1Q07563 AC155252.1-201ENSMUST00000226462 1208 ntBASIC23.9■■□□□ 1.42
Col17a1Q07563 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Col17a1Q07563 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
Col17a1Q07563 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
Col17a1Q07563 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Col17a1Q07563 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
Col17a1Q07563 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
Col17a1Q07563 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.42
Col17a1Q07563 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.42
Col17a1Q07563 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Col17a1Q07563 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
Col17a1Q07563 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Col17a1Q07563 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
Col17a1Q07563 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
Col17a1Q07563 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.42
Col17a1Q07563 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms