Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 Gm37153-201ENSMUST00000193637 231 ntBASIC13.37□□□□□ -0.27
Col8a1Q00780 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC13.37□□□□□ -0.27
Col8a1Q00780 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC13.37□□□□□ -0.27
Col8a1Q00780 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC13.37□□□□□ -0.27
Col8a1Q00780 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Col8a1Q00780 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
Col8a1Q00780 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Col8a1Q00780 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col8a1Q00780 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC13.37□□□□□ -0.27
Col8a1Q00780 Gm16499-203ENSMUST00000204633 2177 ntBASIC13.37□□□□□ -0.27
Col8a1Q00780 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC13.36□□□□□ -0.27
Col8a1Q00780 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
Col8a1Q00780 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
Col8a1Q00780 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC13.36□□□□□ -0.27
Col8a1Q00780 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Col8a1Q00780 Gm2308-201ENSMUST00000166539 1004 ntBASIC13.36□□□□□ -0.27
Col8a1Q00780 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC13.36□□□□□ -0.27
Col8a1Q00780 Gm43767-201ENSMUST00000198933 381 ntBASIC13.36□□□□□ -0.27
Col8a1Q00780 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Hist1h2al-201ENSMUST00000091708 339 ntBASIC13.36□□□□□ -0.27
Col8a1Q00780 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col8a1Q00780 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Col8a1Q00780 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col8a1Q00780 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col8a1Q00780 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC13.35□□□□□ -0.27
Col8a1Q00780 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col8a1Q00780 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col8a1Q00780 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Col8a1Q00780 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col8a1Q00780 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col8a1Q00780 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col8a1Q00780 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC13.35□□□□□ -0.27
Col8a1Q00780 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col8a1Q00780 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col8a1Q00780 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col8a1Q00780 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
Col8a1Q00780 Gm23547-201ENSMUST00000158210 271 ntBASIC13.35□□□□□ -0.27
Col8a1Q00780 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Col8a1Q00780 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC13.35□□□□□ -0.27
Col8a1Q00780 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC13.35□□□□□ -0.27
Col8a1Q00780 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col8a1Q00780 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC13.35□□□□□ -0.27
Col8a1Q00780 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col8a1Q00780 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col8a1Q00780 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Col8a1Q00780 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
Col8a1Q00780 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col8a1Q00780 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col8a1Q00780 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col8a1Q00780 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col8a1Q00780 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC13.35□□□□□ -0.27
Col8a1Q00780 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC13.35□□□□□ -0.27
Col8a1Q00780 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col8a1Q00780 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col8a1Q00780 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col8a1Q00780 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col8a1Q00780 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col8a1Q00780 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col8a1Q00780 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col8a1Q00780 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col8a1Q00780 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC13.34□□□□□ -0.27
Col8a1Q00780 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col8a1Q00780 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col8a1Q00780 Gm12892-201ENSMUST00000117367 1146 ntBASIC13.34□□□□□ -0.27
Col8a1Q00780 Gm11745-201ENSMUST00000121669 448 ntBASIC13.34□□□□□ -0.27
Col8a1Q00780 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col8a1Q00780 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col8a1Q00780 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms