Protein–RNA interactions for Protein: P01849

Tcra, T-cell receptor alpha chain C region, mousemouse

Predictions only

Length 138 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TcraP01849 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
TcraP01849 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC11.51□□□□□ -0.57
TcraP01849 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
TcraP01849 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
TcraP01849 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
TcraP01849 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
TcraP01849 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
TcraP01849 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
TcraP01849 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
TcraP01849 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
TcraP01849 AC174678.1-201ENSMUST00000228007 2749 ntBASIC11.51□□□□□ -0.57
TcraP01849 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
TcraP01849 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC11.5□□□□□ -0.57
TcraP01849 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC11.5□□□□□ -0.57
TcraP01849 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
TcraP01849 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC11.5□□□□□ -0.57
TcraP01849 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC11.5□□□□□ -0.57
TcraP01849 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC11.5□□□□□ -0.57
TcraP01849 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC11.5□□□□□ -0.57
TcraP01849 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
TcraP01849 Gm27000-201ENSMUST00000182943 842 ntBASIC11.5□□□□□ -0.57
TcraP01849 Gm9694-201ENSMUST00000193347 1189 ntBASIC11.5□□□□□ -0.57
TcraP01849 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC11.5□□□□□ -0.57
TcraP01849 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
TcraP01849 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Gm44729-201ENSMUST00000206759 2052 ntBASIC11.5□□□□□ -0.57
TcraP01849 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC11.5□□□□□ -0.57
TcraP01849 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
TcraP01849 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 AC148324.1-201ENSMUST00000219034 4240 ntBASIC11.49□□□□□ -0.57
TcraP01849 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC11.49□□□□□ -0.57
TcraP01849 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
TcraP01849 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
TcraP01849 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC11.49□□□□□ -0.57
TcraP01849 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
TcraP01849 Wnt10b-204ENSMUST00000226655 1807 ntBASIC11.49□□□□□ -0.57
TcraP01849 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC11.49□□□□□ -0.57
TcraP01849 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
TcraP01849 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC11.49□□□□□ -0.57
TcraP01849 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Gm15378-201ENSMUST00000121894 207 ntBASIC11.49□□□□□ -0.57
TcraP01849 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC11.49□□□□□ -0.57
TcraP01849 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Gm10517-202ENSMUST00000192970 758 ntBASIC11.49□□□□□ -0.57
TcraP01849 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC11.49□□□□□ -0.57
TcraP01849 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC11.49□□□□□ -0.57
TcraP01849 AC124581.1-201ENSMUST00000225416 1399 ntBASIC11.49□□□□□ -0.57
TcraP01849 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
TcraP01849 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
TcraP01849 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
TcraP01849 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC11.49□□□□□ -0.57
TcraP01849 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
TcraP01849 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
TcraP01849 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
TcraP01849 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
TcraP01849 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
TcraP01849 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
TcraP01849 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms