Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC17.01■□□□□ 0.31
Trim54Q9ERP3 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Trim54Q9ERP3 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim54Q9ERP3 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trim54Q9ERP3 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim54Q9ERP3 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim54Q9ERP3 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim54Q9ERP3 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim54Q9ERP3 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Trim54Q9ERP3 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim54Q9ERP3 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim54Q9ERP3 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Trim54Q9ERP3 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
Trim54Q9ERP3 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim54Q9ERP3 Gm23935-201ENSMUST00000102303 57 ntBASIC17■□□□□ 0.31
Trim54Q9ERP3 Gm24270-201ENSMUST00000102326 57 ntBASIC17■□□□□ 0.31
Trim54Q9ERP3 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
Trim54Q9ERP3 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC17■□□□□ 0.31
Trim54Q9ERP3 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC17■□□□□ 0.31
Trim54Q9ERP3 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Trim54Q9ERP3 Gm24245-201ENSMUST00000157318 57 ntBASIC17■□□□□ 0.31
Trim54Q9ERP3 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Trim54Q9ERP3 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim54Q9ERP3 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim54Q9ERP3 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC17■□□□□ 0.31
Trim54Q9ERP3 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC17■□□□□ 0.31
Trim54Q9ERP3 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim54Q9ERP3 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Trim54Q9ERP3 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Trim54Q9ERP3 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim54Q9ERP3 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim54Q9ERP3 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC17■□□□□ 0.31
Trim54Q9ERP3 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim54Q9ERP3 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC17■□□□□ 0.31
Trim54Q9ERP3 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim54Q9ERP3 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim54Q9ERP3 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC17■□□□□ 0.31
Trim54Q9ERP3 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17■□□□□ 0.31
Trim54Q9ERP3 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Trim54Q9ERP3 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim54Q9ERP3 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Trim54Q9ERP3 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim54Q9ERP3 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Gm37153-201ENSMUST00000193637 231 ntBASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Gm28265-201ENSMUST00000188201 2319 ntBASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC16.99■□□□□ 0.31
Trim54Q9ERP3 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Gm11873-201ENSMUST00000117877 1304 ntBASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Gm25911-201ENSMUST00000157621 56 ntBASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Gm4899-201ENSMUST00000178708 719 ntBASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 AC131709.1-201ENSMUST00000224731 1180 ntBASIC16.98■□□□□ 0.31
Trim54Q9ERP3 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim54Q9ERP3 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim54Q9ERP3 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trim54Q9ERP3 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim54Q9ERP3 Gm26596-201ENSMUST00000180464 2655 ntBASIC16.97■□□□□ 0.31
Trim54Q9ERP3 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim54Q9ERP3 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim54Q9ERP3 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 74.9 ms