Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC18.31■□□□□ 0.52
Vps53Q8CCB4 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Vps53Q8CCB4 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps53Q8CCB4 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Gm43073-201ENSMUST00000198200 1189 ntBASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Cmtm5-203ENSMUST00000227441 610 ntBASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Gm19430-201ENSMUST00000193847 2137 ntBASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps53Q8CCB4 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Vps53Q8CCB4 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Vps53Q8CCB4 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Vps53Q8CCB4 Gm7862-201ENSMUST00000121461 292 ntBASIC18.28■□□□□ 0.52
Vps53Q8CCB4 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC18.28■□□□□ 0.52
Vps53Q8CCB4 AC138767.1-201ENSMUST00000222661 415 ntBASIC18.28■□□□□ 0.52
Vps53Q8CCB4 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Vps53Q8CCB4 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Vps53Q8CCB4 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Vps53Q8CCB4 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Vps53Q8CCB4 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Vps53Q8CCB4 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Vps53Q8CCB4 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Vps53Q8CCB4 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Vps53Q8CCB4 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 AC160338.1-201ENSMUST00000214232 705 ntBASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Gm6296-201ENSMUST00000222599 943 ntBASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Vps53Q8CCB4 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
Vps53Q8CCB4 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Vps53Q8CCB4 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
Vps53Q8CCB4 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Vps53Q8CCB4 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Vps53Q8CCB4 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Vps53Q8CCB4 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Vps53Q8CCB4 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Vps53Q8CCB4 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 64.4 ms