Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
Col28a1Q2UY11 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC15.32■□□□□ 0.04
Col28a1Q2UY11 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col28a1Q2UY11 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col28a1Q2UY11 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col28a1Q2UY11 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col28a1Q2UY11 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col28a1Q2UY11 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col28a1Q2UY11 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC15.32■□□□□ 0.04
Col28a1Q2UY11 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col28a1Q2UY11 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Col28a1Q2UY11 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col28a1Q2UY11 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col28a1Q2UY11 Gm43598-201ENSMUST00000202482 2479 ntBASIC15.32■□□□□ 0.04
Col28a1Q2UY11 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Gm37812-201ENSMUST00000195216 2475 ntBASIC15.31■□□□□ 0.04
Col28a1Q2UY11 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Gm44450-201ENSMUST00000199528 114 ntBASIC15.3■□□□□ 0.04
Col28a1Q2UY11 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Sybu-209ENSMUST00000228639 4113 ntBASIC15.3■□□□□ 0.04
Col28a1Q2UY11 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col28a1Q2UY11 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Gm17971-201ENSMUST00000190239 806 ntBASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms