Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC17.32■□□□□ 0.36
Hmgb1P63158 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC17.32■□□□□ 0.36
Hmgb1P63158 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC17.32■□□□□ 0.36
Hmgb1P63158 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.32■□□□□ 0.36
Hmgb1P63158 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgb1P63158 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgb1P63158 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgb1P63158 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgb1P63158 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgb1P63158 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgb1P63158 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgb1P63158 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC17.31■□□□□ 0.36
Hmgb1P63158 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.31■□□□□ 0.36
Hmgb1P63158 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgb1P63158 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgb1P63158 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Hmgb1P63158 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgb1P63158 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgb1P63158 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Hmgb1P63158 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgb1P63158 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgb1P63158 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb1P63158 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Hmgb1P63158 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb1P63158 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb1P63158 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb1P63158 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb1P63158 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb1P63158 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb1P63158 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb1P63158 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
Hmgb1P63158 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb1P63158 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb1P63158 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb1P63158 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb1P63158 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC17.3■□□□□ 0.36
Hmgb1P63158 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb1P63158 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb1P63158 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb1P63158 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb1P63158 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgb1P63158 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Hmgb1P63158 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Hmgb1P63158 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC17.29■□□□□ 0.36
Hmgb1P63158 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Hmgb1P63158 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb1P63158 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb1P63158 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb1P63158 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb1P63158 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC17.29■□□□□ 0.36
Hmgb1P63158 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
Hmgb1P63158 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC17.29■□□□□ 0.36
Hmgb1P63158 Gm29518-201ENSMUST00000190858 372 ntBASIC17.29■□□□□ 0.36
Hmgb1P63158 Gm17808-201ENSMUST00000200859 894 ntBASIC17.29■□□□□ 0.36
Hmgb1P63158 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb1P63158 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb1P63158 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb1P63158 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb1P63158 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb1P63158 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb1P63158 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hmgb1P63158 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC17.28■□□□□ 0.36
Hmgb1P63158 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
Hmgb1P63158 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb1P63158 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb1P63158 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb1P63158 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb1P63158 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb1P63158 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb1P63158 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb1P63158 Gm13312-201ENSMUST00000119631 718 ntBASIC17.28■□□□□ 0.36
Hmgb1P63158 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC17.28■□□□□ 0.36
Hmgb1P63158 Gm1818-201ENSMUST00000169406 1184 ntBASIC17.28■□□□□ 0.36
Hmgb1P63158 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC17.28■□□□□ 0.36
Hmgb1P63158 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Hmgb1P63158 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb1P63158 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Hmgb1P63158 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Hmgb1P63158 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hmgb1P63158 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms