Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm42473-201ENSMUST00000201056 2291 ntBASIC12.76□□□□□ -0.37
Cdx1P18111 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
Cdx1P18111 Gm21362-201ENSMUST00000194272 928 ntBASIC12.76□□□□□ -0.37
Cdx1P18111 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC12.76□□□□□ -0.37
Cdx1P18111 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Cdx1P18111 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Cdx1P18111 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Cdx1P18111 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Gm42901-201ENSMUST00000197735 3171 ntBASIC12.76□□□□□ -0.37
Cdx1P18111 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC12.76□□□□□ -0.37
Cdx1P18111 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Cdx1P18111 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC12.76□□□□□ -0.37
Cdx1P18111 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdx1P18111 Gm9768-201ENSMUST00000206007 2861 ntBASIC12.75□□□□□ -0.37
Cdx1P18111 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC12.75□□□□□ -0.37
Cdx1P18111 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC12.75□□□□□ -0.37
Cdx1P18111 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC12.75□□□□□ -0.37
Cdx1P18111 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Cdx1P18111 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Cdx1P18111 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC12.75□□□□□ -0.37
Cdx1P18111 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Cdx1P18111 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdx1P18111 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Cdx1P18111 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC12.74□□□□□ -0.37
Cdx1P18111 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Cdx1P18111 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Cdx1P18111 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC12.74□□□□□ -0.37
Cdx1P18111 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC12.74□□□□□ -0.37
Cdx1P18111 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC12.74□□□□□ -0.37
Cdx1P18111 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC12.74□□□□□ -0.37
Cdx1P18111 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC12.74□□□□□ -0.37
Cdx1P18111 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC12.74□□□□□ -0.37
Cdx1P18111 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdx1P18111 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.37
Cdx1P18111 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms